| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 3,238,465 | G→T | 8.3% | intergenic (+168/‑115) | ygjR → / → alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,238,465 | 0 | G | T | 8.3% | 375.5 / 19.3 | 108 | intergenic (+168/‑115) | ygjR/alx | putative NAD(P)‑dependent dehydrogenase/putative membrane‑bound redox modulator |
| Reads supporting (aligned to +/- strand): ref base G (47/52); new base T (5/4); total (52/56) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.73e-01 | |||||||||||
Only 100 of 110 total aligned reads displayed.
TAAAAGGTATGTAACAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCG > NC_000913/3238317‑3238600 | tAAAAGGTATGTAACAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAg > 2:762184/1‑149 (MQ=255) aaaaGGTATGTAACAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGa > 3:101777/1‑149 (MQ=255) gTATGTAACAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTAt > 4:274628/1‑149 (MQ=255) tAACAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtt > 2:786661/1‑149 (MQ=255) aaCAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCttt > 1:1166092/1‑149 (MQ=255) aaCAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCttt > 1:1060978/1‑149 (MQ=255) aCAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt < 4:101777/149‑1 (MQ=255) cAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCttttt > 1:941461/1‑149 (MQ=255) aGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttttt < 3:274628/149‑1 (MQ=255) ccATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgtt < 2:1166092/149‑1 (MQ=255) cTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTg > 4:1074295/1‑149 (MQ=255) tGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttttt > 2:1381953/1‑138 (MQ=255) tGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttttt < 1:1381953/138‑1 (MQ=255) tGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTga > 4:490119/1‑149 (MQ=255) ggCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑TCTGCGTATTCCt < 2:1214666/132‑1 (MQ=255) gCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTgaga < 3:490119/149‑1 (MQ=255) gCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTgaga > 4:1093134/1‑149 (MQ=255) cTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGAc < 2:1060978/149‑1 (MQ=255) tGAATGGTCTGTCATACTTTGTTACTTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt < 1:1322936/132‑1 (MQ=255) tGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgt < 2:1347256/136‑1 (MQ=255) tGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgt > 1:1347256/1‑136 (MQ=255) aaTGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttttt > 1:808194/1‑132 (MQ=255) aaTGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttttt < 2:808194/132‑1 (MQ=255) aaTGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCtt < 2:189299/149‑1 (MQ=255) gTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCg < 1:786661/149‑1 (MQ=255) gTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCg < 3:1093134/149‑1 (MQ=255) tCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt > 1:1115043/1‑125 (MQ=255) tCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt < 2:1115043/125‑1 (MQ=255) cTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGa > 1:997976/1‑149 (MQ=255) tGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTa > 2:1337172/1‑131 (MQ=255) tGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTa < 1:1337172/131‑1 (MQ=255) tCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTga > 2:1377064/1‑134 (MQ=255) tCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTga > 4:480462/1‑134 (MQ=255) tCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTga < 1:1377064/134‑1 (MQ=255) tCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTga < 3:480462/134‑1 (MQ=255) tCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAg < 2:38239/148‑1 (MQ=255) tCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAg > 1:38239/1‑148 (MQ=255) aTACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑TCTGCGTATTCCttt > 1:620838/1‑118 (MQ=255) aTACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑TCTGCGTATTCCttt < 2:620838/118‑1 (MQ=255) aTACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt < 3:1353693/119‑1 (MQ=255) aTACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgt > 4:306858/1‑123 (MQ=255) aTACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgt < 3:306858/123‑1 (MQ=255) aTACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCg > 2:622496/1‑149 (MQ=255) aCTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAg < 4:725842/149‑1 (MQ=255) tttGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgtt > 4:1373098/1‑120 (MQ=255) tttGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTttgtt < 3:1373098/120‑1 (MQ=255) tttGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGt < 3:1074295/149‑1 (MQ=255) ttACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt < 1:154690/111‑1 (MQ=255) ttACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttt > 2:154690/1‑111 (MQ=255) tACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCtttttt < 3:985362/112‑1 (MQ=255) tACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTgaga < 3:1133110/125‑1 (MQ=255) tACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTgaga > 4:1133110/1‑125 (MQ=255) aCCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGaa < 3:542433/135‑1 (MQ=255) aCCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGACACCTTGCCGGaa > 4:542433/1‑135 (MQ=255) cTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑TCTGCGTATTCCtt > 1:247994/1‑105 (MQ=255) cTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑TCTGCGTATTCCtt < 2:247994/105‑1 (MQ=255) tGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTAt < 3:97158/99‑1 (MQ=255) tGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTAt > 4:97158/1‑99 (MQ=255) tGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTc > 3:950933/1‑101 (MQ=255) tGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTc < 4:950933/101‑1 (MQ=255) aaaGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGAcc < 3:629608/120‑1 (MQ=255) aaaGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGAcc > 4:629608/1‑120 (MQ=255) aaGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGt < 1:661690/113‑1 (MQ=255) aaGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGt > 2:661690/1‑113 (MQ=255) aaGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTAt > 4:1454940/1‑140 (MQ=255) ggggAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAagc > 3:37359/1‑149 (MQ=255) aCTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACGTCTG‑CGTATTCCtttcg < 1:447889/93‑3 (MQ=37) aCTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑TCTGCGTATTCCtttcg > 2:447889/1‑91 (MQ=38) cTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGa < 1:622496/149‑1 (MQ=255) ttCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCttt > 2:555060/1‑89 (MQ=255) ttCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCttt < 1:555060/89‑1 (MQ=255) ttCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGcc < 4:943924/112‑1 (MQ=255) ttCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGcc > 3:943924/1‑112 (MQ=255) aTTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGAc < 1:1396016/76‑1 (MQ=255) aTTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGAc > 2:1396016/1‑76 (MQ=255) gTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGAc < 2:997976/149‑1 (MQ=255) aTCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTAtt > 3:1405932/1‑70 (MQ=255) aTCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTAtt < 4:1405932/70‑1 (MQ=255) aTCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAagc < 1:455482/125‑1 (MQ=255) tCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTgg > 3:268701/1‑149 (MQ=255) aCGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAg > 3:371959/1‑94 (MQ=255) aCGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAg < 4:371959/94‑1 (MQ=255) gATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAg > 3:1440391/1‑97 (MQ=255) gATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAg < 4:1440391/97‑1 (MQ=255) gtgtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTAtg < 4:37359/149‑1 (MQ=255) gtgAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTAtgtg > 4:1800/1‑149 (MQ=255) aaaaaaCACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATaaaaa > 2:950816/1‑104 (MQ=255) aaaaaaCACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATaaaaa < 1:950816/104‑1 (MQ=255) aaaaCACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAgg < 4:268701/149‑1 (MQ=255) aTCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGt < 1:891465/109‑1 (MQ=255) aTCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGt > 2:891465/1‑109 (MQ=255) tCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTa < 3:1800/149‑1 (MQ=255) gCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGAc < 3:843243/94‑1 (MQ=255) gCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGAc > 4:843243/1‑94 (MQ=255) ccGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTcc > 4:55283/1‑96 (MQ=255) ccGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTcc > 2:638582/1‑96 (MQ=255) ccGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTcc < 1:638582/96‑1 (MQ=255) aaaGGAATACG‑TCTGCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTAtgt < 2:736636/115‑1 (MQ=255) aaaGGAATACG‑TCTGCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTAtgt > 1:736636/1‑115 (MQ=255) aaaGGAATACG‑TCTGCGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCg > 3:475521/1‑149 (MQ=255) | TAAAAGGTATGTAACAGACCATTGACTGGCTGAATGGTCTGTCATACTTTGTTACCTGCAAAGGGGAGTAACTTCATTGCCGGTCGATCGTCATTACGATGTGTGAAAAAACACATCCGGTCACCGGGCAACCCGAAAGGAATACG‑CAGACGTATTCCTTTTTTGTTGTAAGTGAGACCTTGCCGGAAGGCGAGGTCTATGCATAAAAAGCAGCGGCTGACGTCTTCCGACGTTGGCCGTTTTTTTATGTGTAAGGAACTTCTATGAATACTGTCGGCACGCCG > NC_000913/3238317‑3238600 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |