New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2543676	46 (0.610)	6 (0.080)	4/252	NT	10.1%	intergenic (‑148/+156)	cysP/ucpA	thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase
	?	NC_000913	= 2543754	62 (0.840)					intergenic (‑226/+78)	cysP/ucpA	thiosulfate‑binding protein/furfural resistance protein, putative short‑chain oxidoreductase

GCACCCTTATAAATTTAATGACTTTCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACA  >  NC_000913/2543532‑2543823                                                                                                                                                 |                                                                                                                                                    gcACCCTTATAAATTTAATGACTTTCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGttt                                                                                                                                                 >  3:180579/1‑149 (MQ=255)       ttATAAATTTAATGACTTTCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGacac                                                                                                                                           <  1:330199/149‑1 (MQ=255)                   tGACTTTCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGga                                                                                                                               <  3:302590/149‑1 (MQ=255)                       tttCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAttttggccccgggcagtgctcgaaat                                                                                                                           >  2:425952‑M1/1‑123 (MQ=255)                       tttCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAttttggccccgggcagtgctcgaaat                                                                                                                           >  2:176806‑M1/1‑123 (MQ=255)                       tttCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGaaa                                                                                                                           <  4:530819/149‑1 (MQ=255)                       tttCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGaaa                                                                                                                           >  4:530225/1‑149 (MQ=255)                              tAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGc                                                                                                                    >  1:189108/1‑149 (MQ=255)                                            ataACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGa                                                                                                                      >  1:617880/1‑133 (MQ=255)                                            ataACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGa                                                                                                                      <  2:617880/133‑1 (MQ=255)                                               aCGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTCCACATAGTACGTGa                                                                                                   <  3:48887/149‑1 (MQ=255)                                                cGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAg                                                                                                  <  3:548989/149‑1 (MQ=255)                                                cGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAg                                                                                                  >  2:230802/1‑149 (MQ=255)                                                        aaaGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAg                                                                                                          >  4:144918/1‑133 (MQ=255)                                                        aaaGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAg                                                                                                          <  3:144918/133‑1 (MQ=255)                                                        aaaGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGa                                                                                                   >  2:566154/1‑140 (MQ=255)                                                        aaaGGAGTAACGGTTTTATATACCGATTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGACCAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGa                                                                                                   <  1:566154/140‑1 (MQ=255)                                                           ggAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCa                                                                                       <  4:180579/149‑1 (MQ=255)                                                                 aCGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAttttggccccgggcagtgctcgaaatcctcacgtactatgtgtacgctccggtttctccgcgctgttc                                                                                 >  3:470480‑M1/1‑81 (MQ=255)                                                                   ggTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCgg                                                                               <  2:561861/149‑1 (MQ=255)                                                                   ggTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCgg                                                                               >  2:515909/1‑149 (MQ=255)                                                                     ttttATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAttttggccccgggcagtgctcgaaatcctcacgtactatgtgtacgctccggtttctccgcgctgttcgtgt                                                                             <  1:176806‑M1/149‑73 (MQ=255)                                                                     ttttATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAttttggccccgggcagtgctcgaaatcctcacgtactatgtgtacgctccggtttctccgcgctgttcgtgt                                                                             <  1:425952‑M1/149‑73 (MQ=255)                                                                     ttttATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTc                                                                                            >  2:3166/1‑134 (MQ=255)                                                                     ttttATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTc                                                                                            <  1:3166/134‑1 (MQ=255)                                                                      tttATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAttttggccccgggcagtgctcgaaatcctcacgtactatgtgtacgctccggtttctccgcgctgttcgtgtc                                                                            <  4:470480‑M1/149‑74 (MQ=255)                                                                             aCCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAAtg                                                                     <  4:372389‑M2/149‑3 (MQ=255)                                                                               cGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAAtgac                                                                   >  3:530225‑M2/1‑145 (MQ=255)                                                                                          ttGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAg                                                        <  3:372389/149‑1 (MQ=255)                                                                                            ggAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGcc                                                      >  3:240962/1‑149 (MQ=255)                                                                                                gTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGt                                                  <  2:189108/149‑1 (MQ=255)                                                                                                   gAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGaa                                               >  3:94049/1‑149 (MQ=255)                                                                                                    aaaaGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAAc                                              >  1:446248/1‑149 (MQ=255)                                                                                                     aaaGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGt                                                  >  2:412812/1‑144 (MQ=255)                                                                                                     aaaGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGt                                                  <  1:412812/144‑1 (MQ=255)                                                                                                      aaGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCTGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACaaataaaat                                                          >  4:472815/1‑135 (MQ=255)                                                                                                      aaGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACaaataaaat                                                          <  3:472815/135‑1 (MQ=255)                                                                                                        gggAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAg                                          >  1:667777/1‑149 (MQ=255)                                                                                                         ggAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGt                                         <  2:446248/149‑1 (MQ=255)                                                                                                               aGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGa                                   >  3:406212/1‑149 (MQ=255)                                                                                                                gAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGAc                                  >  1:638253/1‑149 (MQ=255)                                                                                                                gAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGAc                                  >  1:60518/1‑149 (MQ=255)                                                                                                                   cTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGaa                               >  4:279075/1‑149 (MQ=255)                                                                                                                    ttGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGa                                                                                                                                              <  1:592023/37‑1 (MQ=255)                                                                                                                    ttGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGa                                                                                                                                              >  2:592023/1‑37 (MQ=255)                                                                                                                        ttCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAAtcct                          >  1:450998/1‑149 (MQ=255)                                                                                                                              aGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCcac                    >  2:100815/1‑149 (MQ=255)                                                                                                                                gCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACaa                  >  3:603148/1‑149 (MQ=255)                                                                                                                                     aTTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCa             <  1:100815/149‑1 (MQ=255)                                                                                                                                     aTTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCa             >  2:345002/1‑149 (MQ=255)                                                                                                                                     aTTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCa             >  1:648982/1‑149 (MQ=255)                                                                                                                                      ttgttgCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAg            <  4:603148/149‑1 (MQ=255)                                                                                                                                        gttgCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATg               >  4:229812/1‑144 (MQ=255)                                                                                                                                        gttgCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATg               <  3:229812/144‑1 (MQ=255)                                                                                                                                         ttgCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGgga         >  3:138838/1‑149 (MQ=255)                                                                                                                                              gtcagtTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGaaa    >  2:560938/1‑149 (MQ=255)                                                                                                                                              gtcagtTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGaaa    >  2:471035/1‑149 (MQ=255)                                                                                                                                              gTCAttttggccccgggcagtgctcgaaatcctcacgtactatgtgtacgctccggtttctccgcgctgttcgtgtccaaactgactgcaacaattacgcctgttgaaccaagttcttattcccttttcaacttccaaatcaccaaacg    >  3:530225‑M1/1‑4 (MQ=255)                                                                                                                                               tcagtTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAAc   >  1:38225/1‑149 (MQ=255)                                                                                                                                               tcagtTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAAc   >  1:635284/1‑149 (MQ=255)                                                                                                                                                cAttttggccccgggcagtgctcgaaatcctcacgtactatgtgtacgctccggtttctccgcgctgttcgtgtccaaactgactgcaacaattacgcctgttgaaccaagttcttattcccttttcaacttccaaatcaccaaacggt  <  4:372389‑M1/149‑148 (MQ=255)                                                                                                                                                 |                                                                                                                                                    GCACCCTTATAAATTTAATGACTTTCTAATAGCCATCATATTTATAACGGACGTGAAAGGAGTAACGGTTTTATATACCGTTTGGTGATTTGGAAGTTGAAAAGGGAATAAGAACTTGGTTCAACAGGCGTAATTGTTGCAGTCAGTTTGGACACGAACAGCGCGGAGAAACCGGAGCGTACACATAGTACGTGAGGATTTCGAGCACTGCCCGGGGCCAAAATGACAAATAAAATAGCCTGGTGAACTTAGTTCAAGACGAAATCCTCCCCACAAATGCAGGGAGGAAACA  >  NC_000913/2543532‑2543823

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.