Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,207,591 C→T 6.9% intergenic (‑59/‑556) purH ← / → rrsE IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,207,5910CT 6.9% 187.0 / 3.8 58intergenic (‑59/‑556)purH/rrsEIMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase/16S ribosomal RNA of rrnE operon
Reads supporting (aligned to +/- strand):  ref base C (21/33);  new base T (2/2);  total (23/35)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.38e-01

CGGAAAGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATACAGAAATTACATT  >  NC_000913/4207448‑4207735
                                                                                                                                               |                                                                                                                                                
cGGAAAGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAGTTTTTCGCGAAAAATTCAGc                                                                                                                                             <  1:360546/149‑1 (MQ=255)
  gAAAGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTa                                                                                                                                           <  1:510973/149‑1 (MQ=255)
   aaaGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTaa                                                                                                                                          <  4:453695/149‑1 (MQ=255)
   aaaGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTaa                                                                                                                                          >  3:308448/1‑149 (MQ=255)
          cTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCt                                                                                                                                   >  4:104595/1‑149 (MQ=255)
               cGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGTGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAAc                                                                                                                                         >  3:468873/1‑138 (MQ=255)
               cGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGTGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAAc                                                                                                                                         <  4:468873/138‑1 (MQ=255)
               cGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACgg                                                                                                                              <  1:299787/149‑1 (MQ=255)
                gAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACggg                                                                                                                             <  1:439947/149‑1 (MQ=255)
                gAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACggg                                                                                                                             >  4:381541/1‑149 (MQ=255)
                 aaTTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACgggg                                                                                                                            <  2:530682/149‑1 (MQ=255)
                   ttCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCa                                                                                                                          <  1:500253/149‑1 (MQ=255)
                     cgacgaTACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATc                                                                                                                        <  1:425531/149‑1 (MQ=255)
                     cgacgaTACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATc                                                                                                                        <  2:87064/149‑1 (MQ=255)
                                   ttGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCTccc                                                                                                          <  1:595789/149‑1 (MQ=255)
                                     gTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGc                                                                                                        >  1:73922/1‑149 (MQ=255)
                                      tCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCa                                                                                                       >  4:398917/1‑149 (MQ=255)
                                          aaaCACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACgg                                                                                                                              >  4:652534/1‑122 (MQ=255)
                                          aaaCACTGAGCAGAGCGCGGCGGACTGGACGACGTTGATGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACgg                                                                                                                              <  3:652534/122‑1 (MQ=255)
                                           aaCACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGTGGCATCCTTATTTTTCGCCCGCATTGTa                                                                                                  <  3:572317/149‑1 (MQ=255)
                                           aaCACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTa                                                                                                  <  3:500957/149‑1 (MQ=255)
                                            acacTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATCGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTaa                                                                                                 <  4:564897/149‑1 (MQ=255)
                                              acTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACg                                                                                               >  4:164994/1‑149 (MQ=255)
                                                   gCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATc                                                                                                                        >  2:360978/1‑119 (MQ=255)
                                                   gCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATc                                                                                                                        <  1:360978/119‑1 (MQ=255)
                                                   gCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAAc                                                                                          <  4:108317/149‑1 (MQ=255)
                                                   gCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAAc                                                                                          <  3:104595/149‑1 (MQ=255)
                                                        gcgcGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGCATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCTCGCATTGTAACGAAAACGTTTg                                                                                     >  3:424006/1‑149 (MQ=255)
                                                                     gacgacGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTcgcg                                                                        >  3:520150/1‑149 (MQ=255)
                                                                       tgacgTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGaa                                                                      <  1:612922/148‑1 (MQ=255)
                                                                           gttgttGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTAttt                                                                                                                 <  2:591030/102‑1 (MQ=255)
                                                                           gttgttGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTAttt                                                                                                                 >  1:591030/1‑102 (MQ=255)
                                                                             tgttgCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTtc                                                                >  4:265576/1‑149 (MQ=255)
                                                                                  cATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCttt                                                           <  3:381541/149‑1 (MQ=255)
                                                                                      gTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTAt                                                                                                                   <  4:483997/89‑1 (MQ=255)
                                                                                      gTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTAt                                                                                                                   >  3:483997/1‑89 (MQ=255)
                                                                                      gTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAAt                                                       >  3:19982/1‑149 (MQ=255)
                                                                                      gTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAAt                                                       >  1:525065/1‑149 (MQ=255)
                                                                                          aTCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTg                                                   <  3:164994/149‑1 (MQ=255)
                                                                                            ccccTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGAt                                                 <  4:308448/149‑1 (MQ=255)
                                                                                             cccTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATc                                                <  4:520150/149‑1 (MQ=255)
                                                                                                    tttGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAAttt                                         <  3:398917/149‑1 (MQ=255)
                                                                                                      tGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTg                                       >  2:37006/1‑149 (MQ=255)
                                                                                                        aCTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGAc                                     <  3:265576/149‑1 (MQ=255)
                                                                                                            ttACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACtgtg                                 >  3:364568/1‑149 (MQ=255)
                                                                                                            ttACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACtgtg                                 <  2:73922/149‑1 (MQ=255)
                                                                                                            ttACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACtgtg                                 <  2:663569/149‑1 (MQ=255)
                                                                                                            ttACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACtgtg                                 <  1:693207/149‑1 (MQ=255)
                                                                                                              aCAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGt                               >  2:321974/1‑149 (MQ=255)
                                                                                                                             tGAGTTTTTCGCGAAAAATTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACtgt                                  >  2:428904/1‑131 (MQ=255)
                                                                                                                             tGAGTTTTTCGCGAAAAATTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACtgt                                  <  1:428904/131‑1 (MQ=255)
                                                                                                                             tGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAAt                >  3:691385/1‑149 (MQ=255)
                                                                                                                               aaTTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATAc              <  1:37006/149‑1 (MQ=255)
                                                                                                                                aTTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATACa             <  1:321974/149‑1 (MQ=255)
                                                                                                                                 tttttCGCGAAAAATTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGATGATCACATTTTTGACTGTGGTTACCGTGGGCAAAATACAg            >  4:564767/1‑149 (MQ=255)
                                                                                                                                   tttCGCGAAAAACTCAGCTCACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATACAGaa          <  4:315911/149‑1 (MQ=255)
                                                                                                                                            aaaCTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATACAGAAATTACAtt  <  4:26316/148‑1 (MQ=255)
                                                                                                                                            aaaCTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATACAGAAATTACAtt  >  3:26316/1‑148 (MQ=255)
                                                                                                                                               |                                                                                                                                                
CGGAAAGTGCCTGGGCGAATTCGACGATACCGGCTTTGTCAGAAACACTGAGCAGAGCGCGGCGGACTGGACGACGTTGTTGCATGGTAAATCCCCTGGATTTGACTATTACAGAGAGCGTTAGCTGAATTTTTCGCGAAAAACTCAGCTAACGCCCCTAACGGGGCATCCTTATTTTTCGCCCGCATTGTAACGAAAACGTTTGCGCAACGCTCGCGAATTTTTCTCTTTCAATGGTGATCACAATTTTGACTGTGGTTACCGTGGGCAAAATACAGAAATTACATT  >  NC_000913/4207448‑4207735

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑