New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3619461	29 (0.220)	5 (0.040)	5/492	11.5	3.0%	coding (270/4236 nt)	rhsB	Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor
	?	NC_000913	= 3762271	291 (2.320)					coding (89/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGG  >  NC_000913/3619187‑3619541                                                                                                                                                                                                                                                                                   |                                                                                 ttgcGATGAGCGGAAAACCGGCGGCGCGTCGGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCGGCCGGGGTACGTATTGGTGCCCGCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACGGCAGTTACCGGACAAAAGCGCCCGCGCCGGTgggg                                                                                  <  1:70219/272‑1 (MQ=255)      aTGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTgggggcacc                                                                             <  1:34268/275‑6 (MQ=21)       tGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTCCCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGc                                                                         >  2:385643/1‑278 (MQ=21)        gAGCGGAAAACCGGCGGCGCGGCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGGATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGGCAATCCCCTGGTCGGGGCAAAGGTCCTTCCCGGTGACACCGACCTCGCCCTGCCCGGCCCGCTGGCGGTCACCCTCCGCCGCACCTACAGCAGTTACCGGACAAAAACGCCGCCCCCGgggggggcgcacc                                                                           >  3:70219/1‑268 (MQ=11)                aaCCGGTGGCGCGTAAGGGTAGCATGACGGAGTAGTGCGGTAGCATTGTTCAGGGTTCCGCCGGGTTACGGATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTCCCCCGGCGGAGTGACGTCCGGCCATACGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGc                                                                   <  3:239544/275‑1 (MQ=11)                   cggcggCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCACAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTgg                                                                >  1:445411/1‑275 (MQ=21)                     gcggcgCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCCCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCACCCGCTCCCGCACCTACATCCGTTCCCGCCCACAACCGCCCGCGCCGGCGGGCAGccccggccccgggccgccag                                                            >  4:64044/1‑269 (MQ=11)                           cgTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCCCCCGCACCTCCAGCAGTTTCCGGCCAAAAACCCCCGCCCCGGTGGGGAGCCCCGGCCCCGGCTGGAAAACGcc                                                        >  3:689743/1‑275 (MQ=255)                                gggTGACATGACGCAGTATGGCGGTAGCCTTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACCTCCGGCCATCCGGCCAATCCCCTGCTCGGTCCCAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCCGCCGTTCCTCCTCTCCCGCCCCCACAGCCGTTACCGGACAAACCCCCCCCCCCCGGCGGGGCGCCCCCGCCCCCGCCGGAAAATGccatcg                                                    >  3:373384/1‑270 (MQ=11)                                     aaaTGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat                                               <  1:179106/272‑1 (MQ=17)                                     aCATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGatat                                               <  1:68809/274‑1 (MQ=32)                                               gTATGGGGATAGCATTGTTCAGGGTTCAGCCGGGGTCCGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGGGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAg                                     <  3:521415/274‑1 (MQ=14)                                                    ggtgtacaatgtgtCAGGGTTTAGCCGGGGTACGTATGGGTGCCCCAGCGGGCGTTGCTCGTTCGGTGGGCCCCGGCGGAGTGACGACCGGCCAGACGGTCAATCCCCTGCTCGGTGCAAAGTTACTTCCCGGTGAAACCGCCATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCGCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGAGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGATgcg                                <  3:287205/261‑1 (MQ=11)                                                      ggTAGCATTGTTCAGGGGTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATaa                          <  2:54517/278‑1 (MQ=17)                                                       gTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCGGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGa                             <  1:499644/274‑1 (MQ=17)                                                        ttgCATTGTTCAGGGTGCAGCCGGGGGAGGTATTGGTGGCCCCACCGGCGTGGCCTGTTCGGGGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCGCGGTGCAAAGTTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTgcg                                <  3:290112/268‑1 (MQ=255)                                                         agcggtGTTGAGGGTTCAGCCGGGGTACGTATTGGTGCCGCCACCGGCGTGGCCTGTGCGGGGTGCCCCGGCGGAGGTACGTCCGGCCAGCCGGTCAATCCCCCGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAaca                        <  4:22323/272‑1 (MQ=11)                                                          gCATTGTTCAGGGTTCAGCCGGGGTACGTTTTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATaa                          <  1:689743/274‑1 (MQ=17)                                                          gCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAACATGCCTGCGGCTATCCGCTTACCGCTGcgcgtcaaccca                      >  2:75482/1‑270 (MQ=12)                                                            atggTTCCGGTTCCACCCGGGGTCCGTATTTGTTCCCCCACCGGCGGGGCCTGTCCGGTGTGCCCCGTCACGGTGACGTCAGGCCGTCCGTGCAATCCCCTGCTCGGTGCAAAGGTCCTTCCAGGTGCAACCGACATCGCCCTGCGCGGCCCGCTGCCGTTAATCCGCGCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGAGGAGCCTCGGACCCGGCTGGAAAATGCCTGCGGATATGCGCTTACAGCTGCGCGATAaca                        <  3:517146/271‑1 (MQ=11)                                                             ttGTTCAGGGTCCAGCCGGGGGACGTATTGGCGCCCCAACCGGGGTGGCCTGGGCGGGGGGCCCCGTCGTAGTGACGTCCGGCCCTCCGGTCAAGCCCCTGCTAGGTGCAAATGTCCTTCCCGGTTAAACCGACATCGCCCTGCCCGGCCCGCTTCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAACTGCGCGATAACACACTg                   <  4:29963/278‑1 (MQ=11)                                                                ttCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGAt                 >  2:398098/1‑277 (MQ=32)                                                                   gggggTCAGCCGGGGTAGGTACTGGGGCCCCACCCGGCGTGGCCTGGTCGGTGGGCCCCGGCGGAGGGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTc             <  4:75482/277‑1 (MQ=11)                                                                   aGGGGTCGGCCGGTCTACGGATTGGTGCCCCCACCGGCGTGGCCTTTGCGGTGACCCCCGGCGGCGTGACGTCCTGCCATCCGGTCAATCCCCTGCTCTGTGCAAAGGTCCTGCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAACCGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACt              <  4:395365/277‑1 (MQ=11)                                                                    gggTTCGGCGCGGGGACGTATTGGTGCCCCCCCCGTGGTGGCCGGTTCGGTGTGCCCCGCCGGAGTGACGCCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTc             <  4:577294/277‑1 (MQ=11)                                                                      gTTCAGCCGGGGTACGTTTTGGGCCCCCCCCGGGGGGGGCCTGTTCGGTGGGCCCCGGGGGAGGGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACt              <  3:589052/274‑1 (MQ=11)                                                                          aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCACTCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGCCAAAAAAGCCCGCGACGGTGGGGCCCCTCGACCCCGGCTGGGAAATGCCTGCGGATATCCGCATCCAGCTGCGCGATACTACACTGATACTCAGTGAtt      >  2:68122/1‑277 (MQ=11)                                                                          aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGTTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGCTATCCCCTTACACCTGCGCGCGAAAACACTGATAcacaaggaga      >  2:623640/1‑272 (MQ=11)                                                                          aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAACATGCCTGCGGATATCCGCTTACAGCTGCGCGTCAACCCCCTGATCCTCAGTg         >  3:451328/1‑275 (MQ=12)                                                                          aGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCCCGATAACCCCCTGTACCTCAGTg         >  1:285377/1‑275 (MQ=12)                                                                                 gtccgcagtgggtcccccACCGGCGTGTCCAGTTCGGGGTGCCCCGGCGGACTGCCGTCCGGCCATCCTGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGTAGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGAACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAAcgg  <  3:45454/262‑1 (MQ=11)                                                                                  gcgccattgtggCCCCCCCCGCGGTGGCCTGTTCGGTGTCCCCCGGCGGCGTGCCTTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAAcgg  <  3:240764/263‑1 (MQ=11)                                                                                                                                                                                                                                                                                   |                                                                                 TTACGATGAGCGGAAAACCGGCGGCGCGTCAGGGTGACATGACGCAGTATGGCGGTAGCATTGTTCAGGGTTCAGCCGGGGTACGTATTGGTGCCCCCACCGGCGTGGCCTGTTCGGTGTGCCCCGGCGGAGTGACGTCCGGCCATCCGGTCAATCCCCTGCTCGGTGCAAAGGTCCTTCCCGGTGAAACCGACATCGCCCTGCCCGGCCCGCTGCCGTTCATCCTCTCCCGCACCTACAGCAGTTACCGGACAAAAACGCCCGCGCCGGTGGGGAGCCTCGGCCCCGGCTGGAAAATGCCTGCGGATATCCGCTTACAGCTGCGCGATAACACACTGATACTCAGTGATAACGG  >  NC_000913/3619187‑3619541

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.