| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1084726 | NA (NA) | 3 (0.030) | 3/248 | NT | NA | noncoding (45/86 nt) | REP95 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP95 (repetitive extragenic palindromic) element; contains 2 REP sequences |
| ? | NC_000913 | = 1084773 | NA (NA) | intergenic (+126/‑219) | efeB/phoH | deferrrochelatase, periplasmic/ATP‑binding protein; putative PhoH family P‑loop ATPase | |||||
GGTTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1084576‑1084726‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagtgcACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAACGCGCTT < NC_000913/1084773‑1084626 GGTTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGT > 2:428547/1‑149GGTTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGT > 1:776574/1‑149GGTTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGAAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGT < 2:34958/149‑1GGTTATTTTTTTGCGCTGCCGGAGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGT > 2:683259/1‑149 TTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGC > 4:865428/1‑149 TTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGC < 4:613516/149‑1 TTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCA < 2:115669/106‑1 TTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCA > 1:115669/1‑106 TGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTA < 1:683259/149‑1 TTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTTATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAG > 3:322083/1‑144 TTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAG < 4:322083/144‑1 TCAGTGCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAAC < 3:323586/149‑1 AGTGCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAACGC < 1:497466/149‑1 TGCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAACGCGC > 1:97038/1‑149 GCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAACGCGCT < 1:516027/149‑1 GCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAAC < 3:19828/144‑1 GCACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAAC > 4:19828/1‑144 CACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAACGCGCTT < 1:144496/149‑1 GGTTATTTTTTTGCGCTGCCGGGGGTGAAGGACGCGAACGATTATTTCGGAAGCGCGTTATTGCGGGTTTAATGTTTTTAGGCGGATAAGGCATTTGTGCGCAGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAATCAGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1084576‑1084726‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atcagtgcACGATCGCCGGATGCGGCGTGAACGCCTTATCCAGCCTACCAAACCCGCACTGATTGTAGGCATGATAAGACGCGCAAGCGTCGCATCAGGCATCTGCGCACAAATGCCTTATCCGCCTAAAAACATTAAACCCGCAATAACGCGCTT < NC_000913/1084773‑1084626 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |