| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3743826 = | 373 (3.770) | 18 (0.190) | 10/250 | NT | 5.2% | coding (84/468 nt) | yiaL | DUF386 family protein |
| ? | NC_000913 | 3743864 = | 301 (3.210) | coding (122/468 nt) | yiaL | DUF386 family protein | |||||
TCTCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3743980‑3743826‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaatcgACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAA > NC_000913/3743864‑3744011 TCTCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑G > 4:443974/1‑149 TCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCGCTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAA > 3:502866/1‑149 TCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAA > 3:838949/1‑149 TCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAA > 1:716975/1‑149 TCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAA > 1:92737/1‑149 TCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAA > 2:100566/1‑149 TCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAA > 2:121527/1‑149 CTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAA < 2:287330/149‑1 CTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAA < 2:197196/149‑1 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT > 3:457705/1‑149 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT > 3:392152/1‑149 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT > 3:236283/1‑149 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT > 2:639614/1‑149 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT < 2:483631/149‑1 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT > 2:482575/1‑149 TTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAAT > 1:637762/1‑149 TCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCTGCTCCAGGGCGTT‑‑‑GAAATC < 2:133755/149‑1 TCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATC < 1:513404/149‑1 CGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATCG < 4:126574/149‑1 CGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATCG < 1:592635/149‑1 GCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑G < 3:496764/142‑1 GCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑G > 4:496764/1‑142 GACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTT‑‑‑CAACGCCCTGGAGCCGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATT < 4:328238/149‑1 TTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGC < 3:328238/149‑1 GTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATCCAGTTTCTGGCGTGGGG > 2:645590/1‑149 ATTTCGACCACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGC > 4:78385/1‑149 CGACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAG > 2:435189/1‑149 GACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGACAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGA > 4:32152/1‑149 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAG > 3:111720/1‑149 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTA < 4:637642/115‑1 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTA > 3:637642/1‑115 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGC < 3:616223/105‑1 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGC > 4:616223/1‑105 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGAT < 1:170910/65‑1 ACAACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGAT > 2:170910/1‑65 AACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAA > 1:332597/1‑149 AACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAA > 3:471205/1‑149 AACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAA > 1:42231/1‑149 AACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGAT > 3:442576/1‑120 AACGCCCGGCTCCAGGGCGTTGTCGAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGAT < 4:442576/120‑1 T‑‑‑GAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCTTTGCTATTGATACGG < 1:645590/149‑1 GAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGG > 4:55615/1‑149 GAAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGG > 4:726006/1‑149 AAATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGA < 3:209956/149‑1 AATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAA > 2:405784/1‑149 ATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAA < 1:344924/149‑1 ATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAA < 4:808092/149‑1 ATCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGGCGGTATATCGATATTGAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAA < 2:487198/149‑1 TCGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAAT > 2:198552/1‑149 CGACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATA < 4:585874/149‑1 GACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAA > 3:650213/1‑149 GACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAA > 1:518923/1‑149 TCTCTTCGCCCCACGCCAGAAACTGAATATCGATATACCGACGATGCACTTCCGGACGGTTTACCACCGCTTCGCGTGTGGTTAAATCGATAATTTGCGTATAAATATTTTTGCCGTCGATTTCGACAACGCCCGGCTCCAGGGCGTT‑‑‑GAAATCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/3743980‑3743826‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaaatcgACGGCAAAAATATTTATACGCAAATTATCGATTTAACCACACGCGAAGCGGTGGTAAACCGTCCGGAAGTGCATCGTCGGTATATCGATATTCAGTTTCTGGCGTGGGGCGAAGAGAAAATCGGCATTGCTATTGATACGGGAAATAA > NC_000913/3743864‑3744011 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |