New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 4203248 =96 (0.970)4 (0.040) 4/250 NT 4.4% coding (1323/1398 nt) zraS sensory histidine kinase in two‑component regulatory system with ZraR
?NC_000913 4203288 = 82 (0.870)coding (1363/1398 nt) zraS sensory histidine kinase in two‑component regulatory system with ZraR
Rejected: Frequency below/above cutoff threshold.

Only 100 of 112 total aligned reads displayed.

GCGTTACCGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG  >  NC_000913/4203100‑4203396
                                                                                                                                                    |                                                                                                                                                    
 gcccgctgttcgccagcgcgacgttatagccccagccgcgcagtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggaa                                                                                                                                                     >  4:663159‑M1/148‑149 (MQ=255)
 gcccgctgttcgccagcgcgacgttatagccccagccgcgcagtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggaa                                                                                                                                                     >  1:711061‑M1/148‑149 (MQ=255)
 gcccgctgttcgccagcgcgacgttatagccccagccgcgcagtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggaa                                                                                                                                                     <  1:359175‑M1/2‑1 (MQ=255)
   ccgctgttcgccagcgcgacgttatagccccagccgcgcagtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggAAGc                                                                                                                                                   <  2:469404‑M1/4‑1 (MQ=255)
   ccgctgttcgccagcgcgacgttatagccccagccgcgcagtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggAAGc                                                                                                                                                   >  2:662802‑M1/146‑149 (MQ=255)
     aCCGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCa                                                                                                                                                 <  1:195013/149‑1 (MQ=255)
      ccGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCAGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCag                                                                                                                                                >  4:565489/1‑149 (MQ=255)
        gACAGCGGTAAGGGAATTGCGGTAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCagga                                                                                                                                              <  1:895140/149‑1 (MQ=255)
         aCAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCaggag                                                                                                                                             <  1:19008/149‑1 (MQ=255)
         aCAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCaggag                                                                                                                                             <  4:347756/149‑1 (MQ=255)
         aCAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCaggag                                                                                                                                             <  1:637208/149‑1 (MQ=255)
           aGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAggg                                                                                                                                           <  4:19383/149‑1 (MQ=255)
              ggTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGaaa                                                                                                                                        >  2:704628/1‑149 (MQ=255)
               agcgcgacgttatagccccagccgcgcagtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggAAGCCAGGAGGGaaaa                                                                                                                                       <  4:236990‑M1/16‑1 (MQ=255)
                tAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAg                                                                                                                                      <  3:337850/149‑1 (MQ=255)
                 aaGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAgg                                                                                                                                     <  4:587932/149‑1 (MQ=255)
                   gggAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCt                                                                                                                                   <  2:699011/149‑1 (MQ=255)
                    ggAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTc                                                                                                                                  >  2:875992/1‑149 (MQ=255)
                    ggAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTc                                                                                                                                  >  2:441629/1‑149 (MQ=255)
                        ttGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACg                                                                                                                              <  4:546388/149‑1 (MQ=255)
                        ttGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACg                                                                                                                              >  2:69080/1‑149 (MQ=255)
                          gCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGACTGGGGCTGGCGGTCGTGCACAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGtt                                                                                                                            <  3:542627/149‑1 (MQ=255)
                              cAGATCAGCTTGATGCCATCTTTACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCAcc                                                                                                                        >  2:492509/1‑149 (MQ=255)
                                  tCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCctct                                                                                                                    <  1:704628/149‑1 (MQ=255)
                                  tCAGCTTGATGCCATCTTCACGCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCctct                                                                                                                    >  4:567979/1‑149 (MQ=255)
                                   cAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTg                                                                                                                   <  1:103400/149‑1 (MQ=255)
                                      cTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCt                                                                                                                >  2:664272/1‑149 (MQ=255)
                                         gATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTcc                                                                                                             <  3:847730/149‑1 (MQ=255)
                                          agtaaagcctgcaaaatagtgcagtggctaatgtcatcatccaccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCg                                                                                                            >  3:236990‑M1/107‑149 (MQ=255)
                                           tGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCgg                                                                                                           >  3:102693/1‑149 (MQ=255)
                                           tGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCgg                                                                                                           <  2:266650/149‑1 (MQ=255)
                                            gCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGt                                                                                                          >  2:356510/1‑149 (MQ=255)
                                            gCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGCTCACCCTCTGGCTTCCGGt                                                                                                          <  3:517245/149‑1 (MQ=255)
                                             ccATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTACATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTc                                                                                                         <  1:132088/149‑1 (MQ=255)
                                               aTCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCaa                                                                                                       >  1:752202/1‑149 (MQ=255)
                                               aTCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCaa                                                                                                       >  1:286735/1‑149 (MQ=255)
                                                tCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAat                                                                                                      >  2:332694/1‑149 (MQ=255)
                                                  ttCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAatat                                                                                                    <  2:821602/149‑1 (MQ=255)
                                                    cACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTa                                                                                                  <  1:264075/149‑1 (MQ=255)
                                                       tCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgc                                                                                               >  2:303601/1‑149 (MQ=255)
                                                       tCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgc                                                                                               >  1:235159/1‑149 (MQ=255)
                                                       tCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgc                                                                                               >  4:813475/1‑149 (MQ=255)
                                                       tCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgc                                                                                               >  3:307082/1‑149 (MQ=255)
                                                       tCCGTACGTCACCACTAAAGCCACAGGCACCGGCTTGGGGCGGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAcgc                                                                                               >  2:579523/1‑149 (MQ=255)
                                                           tACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTaa                                                                                           <  1:744336/149‑1 (MQ=255)
                                                           tACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTaa                                                                                           <  3:384943/149‑1 (MQ=255)
                                                             cTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAgg                                                                                         >  2:371089/1‑149 (MQ=255)
                                                              ttCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGTAAAGGCTCAACGTTCACCCTCTGGCTTCCGTTCAATATTACGCGTAAGGa                                                                                        >  4:125281/1‑149 (MQ=255)
                                                              ttCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGa                                                                                        >  2:519186/1‑149 (MQ=255)
                                                              ttCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGa                                                                                        >  1:728091/1‑149 (MQ=255)
                                                               tCACCAGTATAGCTTAAGGCAGCGTGTGGGGGCTGGCTGTCTGGCATAATATTGTTGATCGACACGGGGGTACTATTCAGGTCGCAGGTCAGGAGGGAAAAGGCTCAACGTTCACTCGCTGGTTTCCGGTCAATATTACTCTTAAGGAc                                                                                       <  2:772908/149‑1 (MQ=255)
                                                               tCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCAAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGAc                                                                                       <  3:695930/149‑1 (MQ=255)
                                                                   cacTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCcac                                                                                   >  1:839395/1‑149 (MQ=255)
                                                                   cacTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCcac                                                                                   >  2:53617/1‑149 (MQ=255)
                                                                      tAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCaggag                                                                                                                                             >  2:755808/1‑88 (MQ=255)
                                                                      tAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCaggag                                                                                                                                             <  1:755808/88‑1 (MQ=255)
                                                                      tAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCGACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAg                                                                                <  2:408312/149‑1 (MQ=255)
                                                                        aaGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCag                                                                                                                                                <  4:772343/83‑1 (MQ=255)
                                                                         aGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGAt                                                                             <  1:250278/149‑1 (MQ=255)
                                                                            cGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCGACAAGGATGAc                                                                          <  1:664272/149‑1 (MQ=255)
                                                                            cGAAGGCACCGGATTGGGGATGGCGGTCGTACATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGAc                                                                          <  2:174830/149‑1 (MQ=255)
                                                                                ggCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGATGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCTGTCAATATTACGCGTAAGTACCCACAAGAATGACGTAc                                                                      >  4:181747/1‑149 (MQ=255)
                                                                                 gCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACg                                                                     >  1:836221/1‑149 (MQ=255)
                                                                                   caccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAc                                                                                                 <  4:831857‑M1/54‑1 (MQ=255)
                                                                                   caccaccagaatatcgatattatcgtgcgtcatccttgtgggtccttacgcgtaatattgaccggAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTAc                                                                                                 >  3:831857‑M1/66‑119 (MQ=255)
                                                                                   aCCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTCAGGACCCACAAGGATGACGCACGat                                                                   >  3:577754/1‑149 (MQ=255)
                                                                                   aCCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGat                                                                   >  4:730998/1‑149 (MQ=255)
                                                                                            gggCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGat                                                          >  3:324836/1‑149 (MQ=255)
                                                                                                tGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTc                                                      <  4:485415/149‑1 (MQ=255)
                                                                                                 ggCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGAc                                                                          >  1:724168/1‑128 (MQ=255)
                                                                                                  gCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtg                                                    <  4:228705/149‑1 (MQ=255)
                                                                                                  gCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtg                                                    <  1:332694/149‑1 (MQ=255)
                                                                                                   cGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtgg                                                   <  2:752202/149‑1 (MQ=255)
                                                                                                       cGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCtggtggt                                               <  3:730998/149‑1 (MQ=255)
                                                                                                          gCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGga                                            >  1:469404/1‑149 (MQ=255)
                                                                                                           cATAATATTGTTGAGCAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGgat                                           >  1:348672/1‑149 (MQ=255)
                                                                                                                 atTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGAc                                     <  1:115523/149‑1 (MQ=255)
                                                                                                                  ttgttgAACAACACGGTGGTACAATTCAGGTCGCAAGCCATGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATACCCTGGTGGCGGATGATcaca                                    <  2:744584/149‑1 (MQ=255)
                                                                                                                    gttgAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACAtt                                  >  3:291745/1‑149 (MQ=255)
                                                                                                                     ttgAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTa                                 <  3:715730/149‑1 (MQ=255)
                                                                                                                          caacaCGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc                            <  4:169313/149‑1 (MQ=255)
                                                                                                                          caacaCGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCAc                            <  4:705196/149‑1 (MQ=255)
                                                                                                                           aacaCGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt                           >  2:750201/1‑149 (MQ=255)
                                                                                                                           aacaCGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACt                           >  2:417429/1‑149 (MQ=255)
                                                                                                                            acacGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTg                          <  1:98723/149‑1 (MQ=255)
                                                                                                                              acGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCa                        >  4:765890/1‑149 (MQ=255)
                                                                                                                                   ggtACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtt                   >  2:25385/1‑149 (MQ=255)
                                                                                                                                    gtACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCAc                                                                      >  4:209909/1‑97 (MQ=255)
                                                                                                                                    gtACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCAc                                                                      <  3:209909/97‑1 (MQ=255)
                                                                                                                                     tACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtttt                 >  1:489062/1‑149 (MQ=255)
                                                                                                                                     tACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTAtttt                 >  3:439131/1‑149 (MQ=255)
                                                                                                                                        aaTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCa              <  4:560430/149‑1 (MQ=255)
                                                                                                                                        aaTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCa              <  2:839395/149‑1 (MQ=255)
                                                                                                                                         aTTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAg             >  4:310547/1‑149 (MQ=255)
                                                                                                                                          ttCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAgg            <  1:750201/149‑1 (MQ=255)
                                                                                                                                           tCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGc           >  3:552657/1‑149 (MQ=255)
                                                                                                                                                tCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTAc      >  1:822595/1‑149 (MQ=255)
                                                                                                                                                   cAAGTCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCCTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgc   <  4:551110/149‑1 (MQ=255)
                                                                                                                                                   cAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgc   <  1:681096/149‑1 (MQ=255)
                                                                                                                                                    AAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTgcg  <  3:621320‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
GCGTTACCGACAGCGGTAAGGGAATTGCGGCAGATCAGCTTGATGCCATCTTCACTCCGTACTTCACCACTAAAGCCGAAGGCACCGGATTGGGGCTGGCGGTCGTGCATAATATTGTTGAACAACACGGTGGTACAATTCAGGTCGCAAGCCAGGAGGGAAAAGGCTCAACGTTCACCCTCTGGCTTCCGGTCAATATTACGCGTAAGGACCCACAAGGATGACGCACGATAATATCGATATTCTGGTGGTGGATGATGACATTAGCCACTGCACTATTTTGCAGGCTTTACTGCG  >  NC_000913/4203100‑4203396

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.