New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1062416	67 (0.790)	5 (0.060)	5/252	NT	6.8%	noncoding (10/134 nt)	REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 1062437	73 (0.900)					noncoding (31/134 nt)	REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP91 (repetitive extragenic palindromic) element; contains 3 REP sequences

AAAAACACTGACGGCGCTGTGGCAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1062263‑1062416 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgaTGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGGTAAC  <  NC_000913/1062437‑1062290                                                                                                                                                                                                                                                                                                                AAAAACACTGACGGCGCTGTGGCAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCG                                                                                                                                                           >  2:737522/1‑149    AACACTGACGGCGCTGTGGCAATGGTTACCTGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACCTCGTTTGTGCGCCT                                                                                                                                                        <  2:508360/149‑1                           GGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCTAAACGCGTCTTT                                                                                                                                 <  2:228035/149‑1                                         GTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAAC                                                                                                                   <  1:122627/149‑1                                                      GTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGAAAAGACGCTAAACGCGTCTTT                                                                                                                                 >  2:403878/1‑122                                                       TCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC                                                                                                                           >  3:34281/1‑127                                                       TCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGATGCGACGCTAAACGCGTCTTTTCAGGC                                                                                                                           <  4:34281/127‑1                                                                                                                                                     GCCTGATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTG       <  2:35169/149‑1                                                                                                                                                     GCCTGATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTG       <  3:731383/149‑1                                                                                                                                                      CCTGATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGG      >  1:625967/1‑149                                                                                                                                                      CCTGATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGG      <  3:565862/149‑1                                                                                                                                                       CTGATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGGT     <  2:445904/149‑1                                                                                                                                                          ATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGGTAAC  <  1:300923/149‑1                                                                                                                                                          ATGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGGTAAC  <  2:712150/149‑1                                                                                                                                                                                                                                                                                                                AAAAACACTGACGGCGCTGTGGCAATGGTTACCAGAGTTTGTTGCGCGTTGTCGTCAGTATGACAGCTTTGGTTTTTACGCGGCACTAAGCCAGTTATTGCTGGTGTTAGTGGAGTGCGACCACCAAAACAGATAACGTCGTTTGTGCGCCTGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1062263‑1062416 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcctgaTGCGACGCTAAACGCGTCTTTTCAGGCGCACAAACGACGTTATCTGTTTTGGTGGTCGCACTCCACTAACACCAGCAATAACTGGCTTAGTGCCGCGTAAAAACCAAAGCTGTCATACTGACGACAACGCGCAACAAACTCTGGTAAC  <  NC_000913/1062437‑1062290

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.