New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1983561	73 (0.860)	3 (0.040)	3/250	NT	3.9%	coding (1509/1515 nt)	araG	L‑arabinose ABC transporter ATPase
	?	NC_000913	= 1983596	80 (0.990)					coding (1474/1515 nt)	araG	L‑arabinose ABC transporter ATPase
Rejected: Frequency below/above cutoff threshold.

AATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1983408‑1983561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcaCTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGTG  <  NC_000913/1983596‑1983451                                                                                                                                                                                                                                                                                                              AATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTC                                                                                                                                                         <  1:201845/149‑1                    ACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAG                                                                                                                                                       <  3:71773/132‑1                    ACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAG                                                                                                                                                       >  4:71773/1‑132                                                    GCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAA                                                                                                      <  3:613957/149‑1                                                          CGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGC                                                                                                              >  1:751025/1‑135                                                          CGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGC                                                                                                              <  2:751025/135‑1                                                                                                                                                    TCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGT      <  1:250356/149‑1                                                                                                                                                    TCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGT      >  1:269598/1‑149                                                                                                                                                    TCAGGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGT      >  2:710862/1‑149                                                                                                                                                       GGCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGT   <  1:124867/149‑1                                                                                                                                                        GCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGTG  >  2:519118/1‑149                                                                                                                                                        GCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCA                                           <  1:464103/108‑1                                                                                                                                                        GCACTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCA                                           >  2:464103/1‑108                                                                                                                                                                                                                                                                                                              AATTTGGGACAAAAATGGCACAGGCGATAAAGAGCACCGCAAACACCACCAGCATGCCGTACTGATCCCAGATACGCCCGAAGCTGAATGACGACTTAGGTGCGCCAGACCCCGATGTAGAAACAGAAGACATCATACTCTCCTTACTCAGGCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1983408‑1983561 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcaCTGAGCCTTGCGATGCCTAAAGTCAGCCAGGCTGTTGCCTGAGTAAGGAGAGTATGATGTCTTCTGTTTCTACATCGGGGTCTGGCGCACCTAAGTCGTCATTCAGCTTCGGGCGTATCTGGGATCAGTACGGCATGCTGGTGGTG  <  NC_000913/1983596‑1983451

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.