New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 1787626 =53 (0.620)4 (0.050) 4/254 NT 7.7% coding (182/834 nt) ppsR PEP synthase kinase and PEP synthase pyrophosphorylase
?NC_000913 1787651 = 45 (0.550)coding (207/834 nt) ppsR PEP synthase kinase and PEP synthase pyrophosphorylase

GTATTAGGACACGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCAACGCCGATTGCTCATCGTACCCA  >  NC_000913/1787508‑1787791
                                                                                                                                               |                                                                                                                                            
gTATTAGGACACGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGtcttctg                                                                                                                                         >  3:404971/1‑148 (MQ=255)
   ttAGGACACGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTc                                                                                                                                      >  2:762681/1‑149 (MQ=255)
    tAGGACACGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTcc                                                                                                                                     <  1:620489/149‑1 (MQ=255)
       gACACGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATc                                                                                                                                  <  4:268000/149‑1 (MQ=255)
         cacGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCgt                                                                                                                                >  3:144139/1‑149 (MQ=255)
          acGCAGTAATGTCACAATTTCCCGTCACTATAAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCgtg                                                                                                                               >  2:55490/1‑149 (MQ=255)
               gTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGcc                                                                                                                          <  1:54278/149‑1 (MQ=255)
                tAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCg                                                                                                                         <  4:144139/149‑1 (MQ=255)
                    gTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTGCTCCATCGTGTTGCCGgaga                                                                                                                     <  4:404971/149‑1 (MQ=255)
                      cacaATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGAtt                                                                                                                   >  2:608782/1‑149 (MQ=255)
                       acaATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTc                                                                                                                  <  2:613645/149‑1 (MQ=255)
                           tttCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCgcgc                                                                                                              >  4:343458/1‑149 (MQ=255)
                                  tCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCatcatc                                                                                                       >  1:200970/1‑149 (MQ=255)
                                   cACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCt                                                                                                      <  4:490442/149‑1 (MQ=255)
                                      tATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGTACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCACCGTGTTGCCGGAGATTCGCGCCATCATCTTGc                                                                                                   >  2:114734/1‑149 (MQ=255)
                                           gcagcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGt                                                                                              >  2:535100/1‑149 (MQ=255)
                                           gcagcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGt                                                                                              >  2:8487/1‑149 (MQ=255)
                                             agcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGa                                                                                            <  3:495249/149‑1 (MQ=255)
                                              gcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGaa                                                                                           <  4:334861/149‑1 (MQ=255)
                                              gcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGaa                                                                                           <  4:415515/149‑1 (MQ=255)
                                              gcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGaa                                                                                           <  2:657925/149‑1 (MQ=255)
                                              gcaTCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGaa                                                                                           <  3:392663/149‑1 (MQ=255)
                                                gatatcctggcaaaagccttcactttgcaagatgatggcgcgaatctccggcaacacgatggagtagaagACCAGACAGGCGTGCGCCCGCTGGtctt                                                                                                                                            >  3:250592‑M1/71‑98 (MQ=255)
                                                gatatcctggcaaaagccttcactttgcaagatgatggcgcgaatctccggcaacacgatggagtagaagACCAGACAGGCGTGCGCCCGCTGGtctt                                                                                                                                            <  4:250592‑M1/28‑1 (MQ=255)
                                                     gCTTCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTTAAGGATCAGATTGACGCAATTTATCACCAAACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTCTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCtttt                                                                                    <  3:274872/149‑1 (MQ=255)
                                                      cTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTg                                                                                   <  2:570868/149‑1 (MQ=255)
                                                         ccGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCa                                                                                <  1:709588/149‑1 (MQ=255)
                                                         ccGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCa                                                                                <  1:551092/149‑1 (MQ=255)
                                                            tttGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGa                                                                             >  4:674010/1‑149 (MQ=255)
                                                                  gAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGt                                                                       >  2:267438/1‑149 (MQ=255)
                                                                   aaaaTGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGtt                                                                      >  3:186899/1‑149 (MQ=255)
                                                                       tttgcaagatgatggcgcgaatctccggcaacacgatggagtagaagACCAGACAGGCGTGCGCCCGCTGGtct                                                                                                                                             <  1:160916‑M1/27‑1 (MQ=255)
                                                                       tttgcaagatgatggcgcgaatctccggcaacacgatggagtagaagACCAGACAGGCGTGCGCCCGCTGGtct                                                                                                                                             >  2:160916‑M1/48‑74 (MQ=255)
                                                                                     gggCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCg                                                    >  3:692467/1‑149 (MQ=255)
                                                                                           tGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAg                                                                                          <  2:283810/105‑1 (MQ=255)
                                                                                           tGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAg                                                                                          >  1:283810/1‑105 (MQ=255)
                                                                                             aaGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTacaaca                                            <  2:448030/149‑1 (MQ=255)
                                                                                               ggATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGTCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAag                                          >  2:352302/1‑149 (MQ=255)
                                                                                                gATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTacaa                                              >  3:738780/1‑144 (MQ=255)
                                                                                                gATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTacaa                                              <  4:738780/144‑1 (MQ=255)
                                                                                                gATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAaga                                         <  2:485229/149‑1 (MQ=255)
                                                                                                  tCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAgaga                                       <  1:762681/149‑1 (MQ=255)
                                                                                                       tagACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGaaa                                  <  3:23662/147‑1 (MQ=255)
                                                                                                           cGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTgg                              <  2:217673/149‑1 (MQ=255)
                                                                                                             cAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGAt                            <  4:326764/149‑1 (MQ=255)
                                                                                                              aaTTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATc                           >  2:510105/1‑149 (MQ=255)
                                                                                                               aTTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATcc                          <  4:416518/149‑1 (MQ=255)
                                                                                                                 ttATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCaa                        <  4:692467/149‑1 (MQ=255)
                                                                                                                  tATCACCCGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTCCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCAAc                       <  3:652772/149‑1 (MQ=255)
                                                                                                                   aagaccagcgggcgcacgcctgtctggtCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATc                                                                         >  3:250592‑M2/29‑98 (MQ=255)
                                                                                                                   aagaccagcgggcgcacgcctgtctggtCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATc                                                                         <  4:250592‑M2/70‑1 (MQ=255)
                                                                                                                    agaccagcgggcgcacgcctgtctggtCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCaaa                                                                                                <  1:160916‑M2/47‑1 (MQ=255)
                                                                                                                    agaccagcgggcgcacgcctgtctggtCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCaaa                                                                                                >  2:160916‑M2/28‑74 (MQ=255)
                                                                                                                         AGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCAACGCCGAtt                <  3:342776‑M1/149‑1 (MQ=255)
                                                                                                                         AGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTGGCCCCGCTACAACAAGAGATGAAACTGGATCCAACGCCGAtt                >  3:463910‑M1/1‑149 (MQ=255)
                                                                                                                               gCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCAACGCCGATTGCTCAt          >  2:389443/1‑149 (MQ=255)
                                                                                                                                     gcCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATCCGCGCCATCATCTTGCACAGCGAAGGCTTTTGCCAGGTTATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCACCGCCGATTGCTCATCGTAcc    >  3:494848/1‑149 (MQ=255)
                                                                                                                                       ccGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCAACGCCGATTGCTCATCGTACCCa  >  3:77187/1‑149 (MQ=255)
                                                                                                                                          ctggtCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGgcgc                                                               <  2:344551‑M2/80‑1 (MQ=255)
                                                                                                                                          ctggtCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGgcgc                                                               >  1:344551‑M2/6‑85 (MQ=255)
                                                                                                                                              tCTTCTACTCCATCGTGTTACCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGAt                                      <  2:496878‑M2/105‑1 (MQ=255)
                                                                                                                                              tCTTCTACTCCATCGTGTTACCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGAt                                      >  1:496878‑M2/2‑106 (MQ=255)
                                                                                                                                               |                                                                                                                                            
GTATTAGGACACGCAGTAATGTCACAATTTCCCGTCACTATCAGCAGCATCACGCTGCCGTTTGTCGAAAATGAGAGCCGTGCACGGGCAGTGAAGGATCAGATTGACGCAATTTATCACCAGACAGGCGTGCGCCCGCTGGTCTTCTACTCCATCGTGTTGCCGGAGATTCGCGCCATCATCTTGCAAAGTGAAGGCTTTTGCCAGGATATCGTTCAGGCGCTGGTTGCCCCGCTACAACAAGAGATGAAACTGGATCCAACGCCGATTGCTCATCGTACCCA  >  NC_000913/1787508‑1787791

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.