| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 2,564,640 | G→C | 5.3% | G40R (GGA→CGA) | yffS → | CPZ‑55 prophage; uncharacterized protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,564,640 | 0 | G | C | 5.3% | 339.7 / 8.7 | 95 | G40R (GGA→CGA) | yffS | CPZ‑55 prophage; uncharacterized protein |
| Reads supporting (aligned to +/- strand): ref base G (42/48); new base C (2/3); total (44/51) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.49e-01 | |||||||||||
TGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTGGCGGTAAA > NC_000913/2564494‑2564786 | tGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGa < 1:252375/149‑1 (MQ=255)tGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGa < 3:118204/149‑1 (MQ=255) gATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGt > 3:255591/1‑149 (MQ=255) aTTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGtt < 2:555930/149‑1 (MQ=255) tATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTaaaa > 2:307647/1‑149 (MQ=255) tATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGACCGCAAACGAGTTAACTCCCCGGCGAGTTaact < 1:334029/149‑3 (MQ=255) aTGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTaaaaa < 1:475883/149‑1 (MQ=255) aTGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTaaaaa < 3:229130/149‑1 (MQ=255) aTGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCCCCGGCGAGTTaactc < 3:733715/149‑4 (MQ=255) tGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAaac > 1:64138/1‑149 (MQ=255) gagaTGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAaaca > 3:271980/1‑149 (MQ=255) ggAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAgg > 3:381950/1‑149 (MQ=255) ggAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAgg < 2:290194/149‑1 (MQ=255) agaTAAAAATCATGAGTTACGAAATCAAAACTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGga < 3:237264/149‑1 (MQ=255) gacaaaagTCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGCCAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGgag > 4:487589/4‑149 (MQ=255) tAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGAGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGagag < 2:130934/149‑1 (MQ=255) aaaaaTCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAgg > 2:537437/1‑149 (MQ=255) aaaaaTCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACAAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAgg > 4:151229/1‑149 (MQ=255) aaaaTCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGGTGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGt > 2:661465/1‑149 (MQ=255) aaaaTCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGt < 1:127103/149‑1 (MQ=255) aTCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGttat < 1:412721/149‑1 (MQ=255) tCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGttatt < 4:271980/149‑1 (MQ=255) tGAGTTACGAAAACAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACt < 4:160156/149‑1 (MQ=255) aGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTaa < 3:151229/149‑1 (MQ=255) aCGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGggc < 3:621368/149‑1 (MQ=255) aaaTCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCCGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGggcggc < 4:607076/149‑1 (MQ=255) aTCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGt > 4:231561/1‑149 (MQ=255) tCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGtt > 4:489556/1‑149 (MQ=255) aaaaTTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAg > 2:376395/1‑149 (MQ=255) aaaTTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTTCTAAGGGCGGCGTTAGc < 4:515020/149‑1 (MQ=255) tttGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCAt < 4:272887/149‑1 (MQ=255) tGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTg < 2:177191/149‑1 (MQ=255) cGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGc < 2:66467/149‑1 (MQ=255) gACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCt > 2:671358/1‑149 (MQ=255) tCCTCAAAGGCGCTGCGTTGGAAGGACAATATAAGGGCGCTTAACGTGGTGCCAAATGCGAGGAGATCGAAAACGAGTTAACTCGCCGGGGACTTAAAAACAACAAGGGAGAGGTTATCACTAAGGGCGGCGTTAGCTATTGGCTGGaa > 4:468586/1‑149 (MQ=255) tCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCt < 3:607156/145‑1 (MQ=255) tCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCt > 4:607156/1‑145 (MQ=255) tCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGaa < 2:494232/149‑1 (MQ=255) cTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGt > 4:634346/1‑92 (MQ=255) cTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGt < 3:634346/92‑1 (MQ=255) tCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGt > 3:142492/1‑149 (MQ=255) gcgcTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACgg < 2:545439/149‑1 (MQ=255) gcTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGa < 4:276877/149‑1 (MQ=255) gcTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGa < 4:475036/149‑1 (MQ=255) tGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGATTTAAAAACAACAAgg < 4:634740/90‑1 (MQ=255) tGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGACTTAAAAACAACAAgg > 3:634740/1‑90 (MQ=255) ggAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAAtt > 1:622543/1‑149 (MQ=255) ggAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAAtt > 4:653510/1‑149 (MQ=255) gAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAAttt > 4:114842/1‑149 (MQ=255) aGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCg > 2:594465/1‑149 (MQ=255) ggACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCGTTGGCTGGAAGGTAGACGGGAGCCAAATTTCGa < 2:101563/149‑1 (MQ=255) ggACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGa < 4:708987/149‑1 (MQ=255) gACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGac > 4:710790/1‑149 (MQ=255) gACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGac > 3:758306/1‑149 (MQ=255) ataAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTg < 4:574971/149‑1 (MQ=255) cgcTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAAc < 3:13158/149‑1 (MQ=255) gcTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACt > 3:529140/1‑149 (MQ=255) aaCGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGc < 1:211952/149‑1 (MQ=255) gggCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATg > 4:681242/1‑149 (MQ=255) ggCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGt > 1:639247/1‑149 (MQ=255) cAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCg > 4:683693/1‑149 (MQ=255) aTGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTAATAAGGGCGGCGTTAGCCATGGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCg > 3:466618/1‑149 (MQ=255) tGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGt < 4:758306/149‑1 (MQ=255) gCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGtt < 4:658080/149‑1 (MQ=255) cGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGttt < 1:69977/149‑1 (MQ=255) cGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGttt < 3:164503/149‑1 (MQ=255) aggagATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTAt < 1:273379/149‑1 (MQ=255) gaTCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGccc < 4:282548/149‑1 (MQ=255) aTCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAgg > 3:377847/1‑43 (MQ=255) aTCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAgg < 4:377847/43‑1 (MQ=255) aTCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTa < 1:246200/88‑1 (MQ=255) aTCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTa > 2:246200/1‑88 (MQ=255) aTCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCt > 1:531604/1‑149 (MQ=255) tCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACtgt > 1:27354/1‑123 (MQ=255) tCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACtgt < 2:27354/123‑1 (MQ=255) tCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTg > 1:169065/1‑149 (MQ=255) tCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTg > 1:294309/1‑149 (MQ=255) tCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTg > 4:485031/1‑149 (MQ=255) gCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGAt < 3:683693/149‑1 (MQ=255) gCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGAt > 4:543336/1‑149 (MQ=255) gCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGAt < 4:592541/149‑1 (MQ=255) aaaCGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGc > 3:50716/1‑149 (MQ=255) cGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGa < 1:376395/149‑1 (MQ=255) tttttAACTCCCCGGCGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGAt > 2:442340/4‑149 (MQ=255) tttttAACTCCCCGGCGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGAt < 1:442340/146‑1 (MQ=255) gAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGAt < 2:169065/149‑1 (MQ=255) ttttAACTCCCCGGCGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATg > 2:766932/3‑149 (MQ=255) gTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGc < 3:653510/149‑1 (MQ=255) ttAANTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCg > 3:697029/1‑149 (MQ=255) tAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGt < 4:255591/149‑1 (MQ=255) aaCTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTg > 2:135486/1‑149 (MQ=255) aCTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTgg > 3:394775/1‑149 (MQ=255) aCTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATACCCTGATGCCGATGCGTgg > 2:401237/1‑149 (MQ=255) cTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTGGc < 1:537437/149‑1 (MQ=255) tCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTGGCg < 4:110947/149‑1 (MQ=255) ggggAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTGGCGGTaaa < 3:489556/149‑1 (MQ=255) ggggAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTGGCGGTaaa < 1:66637/149‑1 (MQ=255) | TGGATTCTATGAGATGGGAGATAAAAATCATGAGTTACGAAATCAAAATTTGCGACATCCTCAAAGGCGCTGCGATGGAAGGACAATATAAGGGCGCTCAACGTGGGGCCAAATGCGAGGAGATCGCAAACGAGTTAACTCGCCGGGGAGTTAAAAACAACAAGGGAGAGGTTATTACTAAGGGCGGCGTTAGCCATTGGCTGGAAGGTAGACGGGAGCCAAATTTCGACACTCTGGCTGAACTGTGCGACATGTTCGGCGTTTATGCCCTGATGCCGATGCGTGGCGGTAAA > NC_000913/2564494‑2564786 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |