New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	4200582 =	76 (1.170)	4 (0.070)	3/244	NT	5.3%	coding (17/696 nt)	yjaH	DUF1481 family putative lipoprotein
	?	NC_000913	4200602 =	71 (1.170)					coding (37/696 nt)	yjaH	DUF1481 family putative lipoprotein

TTTTCGCCAGATGCGTACCGCGCCCTGGTCTTCAGCAAATCCACTGGCGGTAAAGGGAGGAAGTGAAGAGTTATGACTACAGGCAGTGAGAAGCAGAGCGCCAGCCAGCATCAATGATCGACGCCAGAAAGACAAAAGGGGTGAAACCACCCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4200736‑4200582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccccttTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCGGCGAT  >  NC_000913/4200602‑4200748                                                                                                                                                                                                                                                                                                                TTTTCGCCAGATGCGTACCGCGCCCTGGTCTTCAGCAAATCCACTAGCGGTAAAGGGAGGAAGTGAAGAGTTATGACTACAGGCAGTGAGAAGCAGAGCGCCAGCCAGCATCAATGATCGACGCCAGAAAGACAAAAGGGGTGAAACCA                                                                                                                                                           >  3:334766/1‑149  TTTCGCCAGATGCGTACCGCGCCCTGGTCTTCAGCAAATCCACTGGCGGTAAAGGGAGGAAGTGAAGAGTTATGACTACAGGCAGTGAGAAGCAGAGCGCCAGCCAGCATCAATGATCGACGCCAGAAAGACAAAAGGGGTGAAACCAC                                                                                                                                                          >  3:451625/1‑149       CCAGATGCGTACCGCGCCCTGGTCTTCAGCAAATCCACTGGCGGTAAAGGGAGGAAGTGAAGAGTTATGACTACAGGCAGTGAGAAGCAGAGCGCCAGCCAGCATCAATGATCGACGCCAGAAAGACAAAAGGGGTGAAACCACCCCTT                                                                                                                                                     <  2:251574/149‑1       CCAGATGCGTACCGCGCCCTGGTCTTCAGCAAATCCACTGGCGGTAAAGGGAGGAAGTGAAGAGTTATGACTACAGGCAGTGAGAAGCAGAGCGCCAGCCAGCATCAATGATCGACGCCAGAAAGACAAAAGGGGTGAAACCACCCCTT                                                                                                                                                     >  3:312302/1‑149                                                                                                                                      AAAAGGGGTGAAACCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCT                      >  4:84854/1‑149                                                                                                                                       AAAGGGGTGAAACCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTG                     >  1:577478/1‑149                                                                                                                                       AAAGGGGTGAAACCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGC                                                                                                                 >  1:204710/1‑57                                                                                                                                       AAAGGGGTGAAACCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGC                                                                                                                 <  2:204710/57‑1                                                                                                                                                    CACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGC        <  4:569394/149‑1                                                                                                                                                     ACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCG       >  2:425820/1‑149                                                                                                                                                     ACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCG       >  4:456891/1‑149                                                                                                                                                       CCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCCGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCGGC     >  4:428943/1‑149                                                                                                                                                        CCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCGGCG    >  1:556710/1‑149                                                                                                                                                          TTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCCGTGGATTTGCTGAAGACCAGTGCGCGGTACGCATCTGGCGACATGGCAGCGGCGAT  >  2:236315/1‑149                                                                                                                                                          TTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCGGCGAT  <  1:425820/149‑1                                                                                                                                                                                                                                                                                                                TTTTCGCCAGATGCGTACCGCGCCCTGGTCTTCAGCAAATCCACTGGCGGTAAAGGGAGGAAGTGAAGAGTTATGACTACAGGCAGTGAGAAGCAGAGCGCCAGCCAGCATCAATGATCGACGCCAGAAAGACAAAAGGGGTGAAACCACCCCTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/4200736‑4200582 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑caccccttTTGTCTTTCTGGCGTCGATCATTGATGCTGGCTGGCGCTCTGCTTCTCACTGCCTGTAGTCATAACTCTTCACTTCCTCCCTTTACCGCCAGTGGATTTGCTGAAGACCAGGGCGCGGTACGCATCTGGCGAAAAGACAGCGGCGAT  >  NC_000913/4200602‑4200748

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.