| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4528083 = | 73 (1.130) | 7 (0.120) | 7/240 | NT | 9.6% | intergenic (+17/+28) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase |
| ? | NC_000913 | 4528108 = | 64 (1.070) | intergenic (+42/+3) | ryjB/sgcQ | novel sRNA, function unknown/putative nucleoside triphosphatase | |||||
GGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4528240‑4528083‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttatccccATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGG > NC_000913/4528108‑4528255 GGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCG > 2:565455/1‑149 ACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTT < 3:17712/149‑1 AACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTAT > 4:331182/1‑149 ACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATC > 2:398463/1‑149 CAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC < 3:61763/149‑1 CAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC < 2:32241/149‑1 GGGGATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGA > 4:580705/1‑65 GGGGATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGA < 3:580705/65‑1 GATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACA < 2:474659/130‑1 GATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACA > 1:474659/1‑130 ATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAA < 3:517949/111‑1 ATAAGCAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAA > 4:517949/1‑111 CAGAGCGCTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCC > 2:113922/1‑149 CTTATCCGCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGT < 2:554310/149‑1 CTTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGT < 2:1248/149‑1 TTATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTT > 3:202299/1‑149 ATCCCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTT < 1:84453/149‑1 CCCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCA > 4:527977/1‑149 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAG > 3:167888/1‑149 CCATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAG < 1:113922/149‑1 CATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGG > 2:22559/1‑149 GGAACAACTCAGTATCGCCGATGGCTGTGTGACCGCAACCACCTTTAAAAAGGACGGCGTTTTTGCCAATTTCGTTGACCAGGCGCGAGTCAGTCAGTTTATGGAGAAAGTGCATCATATACGCCGATAAGATGGGGATAAGCAGAGCGCTTATCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/4528240‑4528083‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcttatccccATCTTATCGGCGTATATGATGCACTTTCTCCATAAACTGACTGACTCGCGCCTGGTCAACGAAATTGGCAAAAACGCCGTCCTTTTTAAAGGTGGTTGCGGTCACACAGCCATCGGCGATACTGAGTTGTTCCTCCACGTTTTCCAGG > NC_000913/4528108‑4528255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |