New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1672798	36 (0.560)	4 (0.070)	4/240	NT	10.0%	intergenic (+17/+22)	ydgD/mdtI	putative peptidase/multidrug efflux system transporter
	?	NC_000913	= 1672804	39 (0.650)					intergenic (+23/+16)	ydgD/mdtI	putative peptidase/multidrug efflux system transporter

GCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCC  >  NC_000913/1672660‑1672946                                                                                                                                           |                                                                                                                                                     gCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGcggg                                                                                                                                            >  2:226282‑M2/1‑145 (MQ=255)     gCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGcgggcagc                                                                                                                                        >  2:73460‑M2/1‑141 (MQ=255)     gCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGcgggcagc                                                                                                                                        >  1:142773‑M2/1‑141 (MQ=255)     gCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGcgggcagc                                                                                                                                        <  2:142773‑M2/149‑9 (MQ=255)        attaattGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGcgctgtcgggcagc                                                                                                                                        <  1:320830‑M1/146‑15 (MQ=255)        attaattGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGcgctgtcgggcagc                                                                                                                                        >  2:320830‑M1/1‑132 (MQ=255)        attaattGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTc                                                                                                                                     <  1:351211/149‑1 (MQ=255)        attaattGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCCCGGGCAGCGTc                                                                                                                                     <  3:333129/149‑1 (MQ=255)               ggggTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTtcatca                                                                                                                              <  2:316986/149‑1 (MQ=255)               ggggTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTtcatca                                                                                                                              <  3:342126/149‑1 (MQ=255)                gggTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAg                                                                                                                             <  3:398166/149‑1 (MQ=255)                   tGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCa                                                                                                                          >  2:340250/1‑149 (MQ=255)                             ggCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCa                                                                                                                >  1:57041/1‑149 (MQ=255)                                tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGTAAGTTTCACCATGa                                                                                                             >  3:360023/1‑149 (MQ=255)                                tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCTAGTTTCAcc                                                                                                                 >  1:59997/1‑145 (MQ=255)                                tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCTAGTTTCAcc                                                                                                                 <  2:59997/145‑1 (MQ=255)                                tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGa                                                                                                             <  4:459339/149‑1 (MQ=255)                                tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGa                                                                                                             <  3:111283/149‑1 (MQ=255)                                       gcgAAAGATCGCTGGCGCGCCGGTAACCGAGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGGCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGCGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTcc                                                                                                      >  2:528792/1‑149 (MQ=255)                                                      cgcgcCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGAc                                                                                       <  2:57041/149‑1 (MQ=255)                                                        cgcCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCa                                                                                     <  2:364116/149‑1 (MQ=255)                                                         gcCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAg                                                                                    <  2:445649/149‑1 (MQ=255)                                                            gATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGcc                                                                                 >  1:446078/1‑149 (MQ=255)                                                                   gggCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAg                                                                          >  2:418052/1‑149 (MQ=255)                                                                        aTTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGcgctgtcgggcagcgttt                                                                                                                                    >  3:427781‑M1/1‑68 (MQ=255)                                                                        aTTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGcgctgtcgggcagcgttt                                                                                                                                    <  4:427781‑M1/86‑19 (MQ=255)                                                                        aTTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCttt                                                                     >  1:334459/1‑149 (MQ=255)                                                                         tttCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTa                                                                    <  4:147347/149‑1 (MQ=255)                                                                             tGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGAt                                                                >  3:10555/1‑149 (MQ=255)                                                                               ttACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGAttt                                                              >  2:459329/1‑149 (MQ=255)                                                                                             gACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGTAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCaaa                                                >  2:487632/1‑149 (MQ=255)                                                                                              aCAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAAc                                               <  4:10555/149‑1 (MQ=255)                                                                                                  gCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGa                                           >  1:150358/1‑149 (MQ=255)                                                                                                   cTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGAt                                          <  1:131104/149‑1 (MQ=255)                                                                                                    tGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATc                                         <  1:432095/149‑1 (MQ=255)                                                                                                      gATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCa                                       >  2:464997/1‑149 (MQ=255)                                                                                                       aTCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCaa                                      >  1:109383/1‑149 (MQ=255)                                                                                                       aTCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCaa                                      >  4:381820/1‑149 (MQ=255)                                                                                                        tCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAAc                                     <  2:334459/149‑1 (MQ=255)                                                                                                                           tGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTggcggc                  <  2:150358/149‑1 (MQ=255)                                                                                                                            gTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCa                 >  1:441352/1‑149 (MQ=255)                                                                                                                            gTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCa                 >  4:33274/1‑149 (MQ=255)                                                                                                                                aaaCGCTGCCCGACAGCGcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaat                                                                            >  3:427781‑M2/1‑18 (MQ=255)                                                                                                                                aaaCGCTGCCCGACAGCGcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaat                                                                            <  4:427781‑M2/86‑69 (MQ=255)                                                                                                                                   cGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAAc                          >  3:316505/1‑133 (MQ=255)                                                                                                                                   cGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAAc                          <  4:316505/133‑1 (MQ=255)                                                                                                                                    gCTGCCCGcgctgtcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaatggcccggttatcggcgcgccagcgatctttcgcggcaggagccgaactttgcaccccaattaattgc         <  2:142773‑M1/149‑142 (MQ=255)                                                                                                                                    gCTGCCCGcgctgtcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaatggcccggttatcggcgcgccagcgatctttcgcggcaggagccgaactttgcaccccaattaattgc         >  1:142773‑M1/1‑8 (MQ=255)                                                                                                                                    gCTGCCCGcgctgtcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaatggcccggttatcggcgcgccagcgatctttcgcggcaggagccgaactttgcaccccaattaattgc         >  2:73460‑M1/1‑8 (MQ=255)                                                                                                                                    gCTGCCCGACAGCGcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaatggcccggttatcggcgcgccagcgatctttcgcggcaggagccgaactttgcaccccaattaat            <  1:320830‑M2/146‑133 (MQ=255)                                                                                                                                    gCTGCCCGACAGCGcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaatggcccggttatcggcgcgccagcgatctttcgcggcaggagccgaactttgcaccccaattaat            >  2:320830‑M2/1‑14 (MQ=255)                                                                                                                                        cccGcgctgtcgggcagcgtttgaacattatttttgcgacagttgatccagcttgtcgcgaaaaccggtaacagaaatggcccggttatcggcgcgccagcgatctttcgcggcaggagccgaactttgcaccccaattaattgccagc     >  2:226282‑M1/1‑4 (MQ=255)                                                                                                                                         ccGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGc    <  3:205133/149‑1 (MQ=255)                                                                                                                                         ccGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGc    <  2:446078/149‑1 (MQ=255)                                                                                                                                           gACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGccc  >  3:309458/1‑149 (MQ=255)                                                                                                                                           gACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGccc  <  1:405857/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                     GCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAACGTGGCGGCAATACCAAACCCGCCC  >  NC_000913/1672660‑1672946

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.