New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1958447 =	42 (0.650)	3 (0.050)	3/242	NT	7.2%	intergenic (‑315/+73)	torY/cutC	TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein
	?	NC_000913	1958474 =	38 (0.630)					intergenic (‑342/+46)	torY/cutC	TMAO reductase III (TorYZ), cytochrome c‑type subunit/copper homeostasis protein

AGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATA  >  NC_000913/1958300‑1958585                                                                                                                                                    |                                                                                                                                           aGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATaaaaaaa                                                                                                                                            <  4:58790/148‑1 (MQ=255) aGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATaaaaaaa                                                                                                                                            >  3:58790/1‑148 (MQ=255) aGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAg                                                                                                                                           >  2:586270/1‑149 (MQ=255) aGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAg                                                                                                                                           <  2:387060/149‑1 (MQ=255) aGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAg                                                                                                                                           <  2:248648/149‑1 (MQ=255)  gAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAgg                                                                                                                                          <  3:343833/149‑1 (MQ=255)     tatatatTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGccc                                                                                                                                       <  2:227679/149‑1 (MQ=255)     atcagatgaacacgcggacgagtattcgcgttatatcgtagacggggcggcggttgctgaaatgaaaggaatcattgaacgccatcaggccaaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccAGGccc                                                                                                                                       <  1:254122‑M1/6‑1 (MQ=255)          atTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGtt                                                                                                                                  <  1:127624/149‑1 (MQ=255)              aTCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGaaa                                                                                                                              <  2:399519/149‑1 (MQ=255)               tCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAAt                                                                                                                             >  1:401978/1‑149 (MQ=255)                     ttAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAgg                                                                                                                       <  4:138645/149‑1 (MQ=255)                     gacgagtattcgcgttatatcgtagacggggcggcggttgctgaaatgaaaggaatcattgaacgccatcaggccaaatgatttttaccgttgcatcatgtcgcccaatatgatgcttgctcgtcccAGGCCCCTGTTGAAATTGCAgg                                                                                                                       >  2:335443‑M1/128‑149 (MQ=255)                           aTTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTg                                                                                                                 >  3:38549/1‑149 (MQ=255)                           aTTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTg                                                                                                                 >  1:18548/1‑149 (MQ=255)                            tttAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTgg                                                                                                                >  3:348003/1‑149 (MQ=255)                                 aTCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGa                                                                                                           <  2:401978/149‑1 (MQ=255)                                      aTAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGagcaag                                                                                                      >  4:515784/1‑149 (MQ=255)                                          ttaatGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGCCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGcatc                                                                                                  <  4:340109/149‑1 (MQ=255)                                                   atatatACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGc                                                                                         <  1:413794/149‑1 (MQ=255)                                                           aaTATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACatgat                                                                                 >  4:311266/1‑149 (MQ=255)                                                           aaTATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACatgat                                                                                 >  4:551796/1‑149 (MQ=255)                                                            atatTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACatgatg                                                                                <  4:121319/149‑1 (MQ=255)                                                            atatTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACatgatg                                                                                >  3:447050/1‑149 (MQ=255)                                                             tatTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGc                                                                               <  3:515784/149‑1 (MQ=255)                                                              atTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCa                                                                              >  1:43670/1‑149 (MQ=255)                                                                         aaCGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAAt                                                                   >  2:282092/1‑149 (MQ=255)                                                                                 gcgcACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGc                                                           <  4:100337/149‑1 (MQ=255)                                                                                 gcgcACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGc                                                           <  2:18548/149‑1 (MQ=255)                                                                                 gcgcACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGc                                                           <  4:38549/149‑1 (MQ=255)                                                                                      cTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGAt                                                      <  2:274878/149‑1 (MQ=255)                                                                                           aCCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGt                                                 >  3:229547/1‑149 (MQ=255)                                                                                             ccGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTc                                               >  4:102088/1‑149 (MQ=255)                                                                                             ccGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTc                                               >  1:137712/1‑149 (MQ=255)                                                                                             ccGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTc                                               >  1:282802/1‑149 (MQ=255)                                                                                               gCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCaa                                             <  1:315250/149‑1 (MQ=255)                                                                                                      aGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTcc                                      <  3:99976/149‑1 (MQ=255)                                                                                                       gATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCt                                     >  2:179323/1‑149 (MQ=255)                                                                                                        tttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccAGGCCCCTGTTGAAATTGCAggg                                                                                                                      >  1:469302‑M1/45‑67 (MQ=255)                                                                                                        tttaccgttgcatcatgtcgcccaatatgatgcttgctcgtaccAGGCCCCTGTTGAAATTGCAggg                                                                                                                      <  2:469302‑M1/23‑1 (MQ=255)                                                                                                          cACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttc                                  <  3:2163/149‑1 (MQ=255)                                                                                                            cGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcat                                <  3:311266/149‑1 (MQ=255)                                                                                                              gTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcattt                              >  3:266584/1‑149 (MQ=255)                                                                                                                tATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttcatttca                            <  1:27002/149‑1 (MQ=255)                                                                                                                 aTCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAg                           <  1:521002/149‑1 (MQ=255)                                                                                                                    gttcgttTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCaa                        >  1:565452/1‑149 (MQ=255)                                                                                                                     ttcgttTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAAc                       >  4:116869/1‑149 (MQ=255)                                                                                                                              tataCTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttc                                  <  4:222690/129‑1 (MQ=255)                                                                                                                              tataCTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCtttc                                  >  3:222690/1‑129 (MQ=255)                                                                                                                                      tCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGa      <  2:282802/149‑1 (MQ=255)                                                                                                                                      tCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGa      <  2:137712/149‑1 (MQ=255)                                                                                                                                          ggATAAAAAAAGGCCCCTGTTGAAATTTCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGAtata  >  2:254122/1‑149 (MQ=255)                                                                                                                                                aaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGAtt                                        <  4:159640/105‑1 (MQ=255)                                                                                                                                                aaaaaGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGAtt                                        >  3:159640/1‑105 (MQ=255)                                                                                                                                                    |                                                                                                                                           AGAATATATATTTATCAGTTTTAGTAATTTAAATCCCATAATTAATGTGAATATATACAATATTTTTAGCACAACGCTATGCGCACTGTCACCCGCTCAACAGATCACGGTTATCGTTCGTTTTTTATACTGTTCAGGGATAAAAAAAGGCCCCTGTTGAAATTGCAGGGGCCTGGTACGAGCAAGCATCATATTGGGCGACATGATGCAACGGTAAAAATCATTTGGCCTGATGGCGTTCAATGATTCCTTTCATTTCAGCAACCGCCGCCCCGTCTACGATATA  >  NC_000913/1958300‑1958585

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.