| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3220880 = | NA (NA) | 3 (0.050) | 3/236 | NT | NA | noncoding (1/31 nt) | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP230 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | 3220911 = | NA (NA) | intergenic (+38/+4) | patA/ygjH | putrescine:2‑oxoglutaric acid aminotransferase, PLP‑dependent/putative tRNA binding protein; putative tRNA corner chaperone | |||||
ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTC > NC_000913/3220732‑3221010 | aCTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCaaa < 1:348342/149‑1 (MQ=255)aCTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCaaa < 1:345887/149‑1 (MQ=255)aCTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCaaa < 1:327808/149‑1 (MQ=255) tggtcttatgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagAt > 4:63489‑M1/148‑149 (MQ=255) ggtcttatgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATc > 3:132148‑M1/147‑149 (MQ=255) gtcttatgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCg < 1:71684‑M1/4‑1 (MQ=255) tcttatgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCgg < 1:259213‑M1/5‑1 (MQ=255) gtggCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCgg > 3:406298/1‑149 (MQ=255) cttatgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctattaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCGGa > 1:520579‑M1/144‑149 (MQ=255) ggCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGAt < 2:170794/149‑1 (MQ=255) tgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCGGATGGc < 1:451456‑M1/10‑1 (MQ=255) tgcaatctgcaaaaagcgaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCGGATGGc < 2:131894‑M1/10‑1 (MQ=255) gAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGa < 1:530226/149‑1 (MQ=255) gaaaatgcgtggtgaaacgtcggaatgcatgctgttgtgtgcggaaaccgatgacggcagtgaaagcgtgctgttaacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCGGATGGCGATACGACGTCGCCATc > 2:512853‑M1/123‑149 (MQ=255) cAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATcc > 1:25372/1‑149 (MQ=255) aCCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGAcgc < 4:554565/149‑1 (MQ=255) gCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTa > 1:167904/1‑149 (MQ=255) tgacactgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGCAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGTTCCGCCGTCGCCATCCGATCTTTTTATACGACGCGTACGccc < 2:31331/149‑1 (MQ=255) actgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAg > 2:269257/1‑149 (MQ=255) tgacCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGc < 4:406298/149‑1 (MQ=255) cATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttt > 3:458984/1‑120 (MQ=255) cATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCttt < 4:458984/120‑1 (MQ=255) cATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGcatca > 1:359023/1‑149 (MQ=255) tGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAAc < 1:269257/149‑1 (MQ=255) gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTaa > 4:425410/1‑146 (MQ=255) gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTaa < 3:425410/146‑1 (MQ=255) gTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAg < 2:326065/149‑1 (MQ=255) gATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCtttt > 1:406576/1‑100 (MQ=255) gATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCtttt < 2:406576/100‑1 (MQ=255) aaaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCt > 4:487506/1‑149 (MQ=255) aaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCtt < 2:316899/149‑1 (MQ=255) aaGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCtt < 3:511483/149‑1 (MQ=255) gcggcgCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTc > 2:451456/1‑149 (MQ=255) cggcgCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACCCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCa < 2:25372/149‑1 (MQ=255) ggcgCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCAc > 2:259213/1‑149 (MQ=255) gTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCg < 4:377576/149‑1 (MQ=255) aacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCGGATGGCGATACGACGTCGCCATcc > 2:244050‑M1/48‑75 (MQ=255) aacgccggagcggatgatgcctgcgggcgtacgcgtcgtataaaaagATCGGATGGCGATACGACGTCGCCATcc < 1:244050‑M1/28‑1 (MQ=255) aGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGc > 1:596529/1‑122 (MQ=255) aGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGc < 2:596529/122‑1 (MQ=255) cgcTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCg < 3:20463/149‑1 (MQ=255) aGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACacaaca < 2:359023/149‑1 (MQ=255) aGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACacaaca > 4:496245/1‑149 (MQ=255) tAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACa < 1:211980/108‑1 (MQ=255) tAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACa > 2:211980/1‑108 (MQ=255) aaGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgca < 1:260329/149‑1 (MQ=255) gtgtCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCtt > 2:237803/1‑113 (MQ=255) gtgtCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCtt < 1:237803/113‑1 (MQ=255) tCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAgcatgcat > 4:202120/1‑149 (MQ=255) cGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCAtt > 2:352410/1‑149 (MQ=255) gaagaaGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTc > 1:66226/1‑149 (MQ=255) agaagCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCa > 4:384556/1‑73 (MQ=255) agaagCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCa < 3:384556/73‑1 (MQ=255) | ACTGGTGGCCGGAACGCTCAATAACGCCAAAACGATCCGCATTGAACCGCCACTGACACTGACCATTGAACAGTGTGAACTGGTGATCAAAGCGGCGCGTAAGGCGCTGGCGGCCATGCGAGTAAGTGTCGAAGAAGCGTAATATCAAATCGGATGGCGATACGACGTCGCCATCCGATCTTTTTATACGACGCGTACGCCCGCAGGCATCATCCGCTCCGGCGTTAACAGCACGCTTTCACTGCCGTCATCGGTTTCCGCACACAACAGCATGCATTC > NC_000913/3220732‑3221010 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |