New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3629290 =	43 (0.660)	3 (0.050)	3/244	NT	7.3%	coding (249/2736 nt)	rbbA	ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein
	?	NC_000913	3629322 =	36 (0.590)					coding (217/2736 nt)	rbbA	ribosome‑associated ATPase: ATP‑binding protein/ATP‑binding membrane protein

TCAGCAGCTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATAT  >  NC_000913/3629142‑3629438                                                                                                                                                     |                                                                                                                                                     aaaaccgttgcgctgaacaatatcactctcgatattccggcccgctgtatggtcgggctgattggcccggacggcgtcgggaagtcgagcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctggg                                                                                                                                                      >  3:416710‑M1/149‑149 (MQ=255)    gcagcTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCgcgg                                                                                                                                                   >  2:320798/1‑149 (MQ=255)      cgttgcgctgaacaatatcactctcgatattccggcccgctgtatggtcgggctgattggcccggacggcgtcgggaagtcgagcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctgggcggcg                                                                                                                                                 >  1:466713‑M1/144‑149 (MQ=255)       gttgcgctgaacaatatcactctcgatattccggcccgctgtatggtcgggctgattggcccggacggcgtcgggaagtcgagcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctggGCGGCGa                                                                                                                                                >  4:117690‑M1/143‑149 (MQ=255)       gcTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGa                                                                                                                                                <  4:277877/149‑1 (MQ=255)           aTTGATGCGGACTTCCCGCTCCGATTTGTAGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGGGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCTCGGGCAGACGTCGCGGCGATGCt                                                                                                                                            >  2:61073/1‑149 (MQ=255)            ttGATTCGCACTTCCCGCTACGCTTTGTCGTGACCGAACAGGCGAGCGAAAAGATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGGCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCtt                                                                                                                                           >  4:496696/1‑149 (MQ=255)                ttCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCggg                                                                                                                                       >  3:189102/1‑149 (MQ=255)                      cTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATTCAAGTTTTCATACACCGAAAAGGGGGGGGTGAGGTTTTTTCCCAGCCCCTGCGGCATCCAAGCGGTGCGCCGGGAGACGTTCCGGCGGTGCCTCGGGTcgccc                                                                                                                                 >  2:558366/1‑147 (MQ=255)                           cgctccgctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATc                                                                                                                            <  2:430267/149‑1 (MQ=255)                            gctccgctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTc                                                                                                                                     >  2:535999/1‑139 (MQ=255)                            gctccgctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTc                                                                                                                                     <  1:535999/139‑1 (MQ=255)                                  ctTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGccc                                                                                                                     <  1:319784/149‑1 (MQ=255)                                   tttGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCa                                                                                                                    >  3:530875/1‑149 (MQ=255)                                   ttccggcccgctgtatggtcgggctgattggcccggacggcgtcgggaagtcgagcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCa                                                                                                                    >  2:487956‑M1/115‑149 (MQ=255)                                       tCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCAc                                                                                                                <  2:80984/149‑1 (MQ=255)                                         gTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCa                                                                                                              >  1:177874/1‑149 (MQ=255)                                             ccGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATcac                                                                                                          >  1:263849/1‑149 (MQ=255)                                                     gcgagcgaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCt                                                                                                  <  1:545128/149‑1 (MQ=255)                                                       gagcgaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGt                                                                                                >  3:369587/1‑149 (MQ=255)                                                        agcgaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGtt                                                                                               <  3:272869/149‑1 (MQ=255)                                                           gaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCaa                                                                                            <  3:329007/149‑1 (MQ=255)                                                           gaAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCaa                                                                                            <  4:189102/149‑1 (MQ=255)                                                            aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAAt                                                                                           >  4:382869/1‑149 (MQ=255)                                                            aaaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAAt                                                                                           >  4:444739/1‑149 (MQ=255)                                                             aaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATg                                                                                                                                              >  2:545698/1‑97 (MQ=255)                                                             aaaaaTCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATg                                                                                                                                              <  1:545698/97‑1 (MQ=255)                                                                            gtcgggaagtcgagcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATcgcc                                                                                                                         <  2:351577‑M1/30‑1 (MQ=255)                                                                            gtcgggaagtcgagcttgttgtcgttgatttccggtgcccgcgtcattgaacagggcaatgtgatggtgctggGCGGCGATGCTTCGGGTCGCGCATATcgcc                                                                                                                         >  1:351577‑M1/74‑103 (MQ=255)                                                                              tACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCGCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAAt                                                                         >  1:252347/1‑149 (MQ=255)                                                                                 acCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCaa                                                                      <  1:260132/149‑1 (MQ=255)                                                                                 acCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCaa                                                                      >  4:124051/1‑149 (MQ=255)                                                                                 acCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCaa                                                                      <  3:518673/149‑1 (MQ=255)                                                                                          gtgtGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGCGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGAcaacaa                                                             <  4:48932/149‑1 (MQ=255)                                                                                              ggTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTc                                                         <  2:516765/149‑1 (MQ=255)                                                                                              ggTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTc                                                         <  1:201704/149‑1 (MQ=255)                                                                                              ggTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTGCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTc                                                         <  2:263849/149‑1 (MQ=255)                                                                                               gTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCg                                                        <  3:204319/149‑1 (MQ=255)                                                                                               gTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCg                                                        >  1:347425/1‑149 (MQ=255)                                                                                                tAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGa                                                       >  4:247606/1‑149 (MQ=255)                                                                                                 agagGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGAc                                                      >  1:586951/1‑149 (MQ=255)                                                                                                   agGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACtt                                                    >  4:549757/1‑149 (MQ=255)                                                                                                     gTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGATCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTcc                                                  >  2:207785/1‑149 (MQ=255)                                                                                                     gTTTTTGCCCAGCCCCCGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTcc                                                  >  3:320607/1‑149 (MQ=255)                                                                                                             ccAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCg                                          >  1:118784/1‑149 (MQ=255)                                                                                                                 ccccTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCg                                      <  3:549757/149‑1 (MQ=255)                                                                                                                              cAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGTCGTCCGGGCCAATCAGccc                         >  4:399628/1‑149 (MQ=255)                                                                                                                               aGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTTAATGACGCGGTCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCg                        >  2:582125/1‑149 (MQ=255)                                                                                                                               aGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCg                        >  1:23194/1‑149 (MQ=255)                                                                                                                                              aGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGcc         >  3:471579/1‑149 (MQ=255)                                                                                                                                                aCGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCaa                                                                      >  2:596668/1‑86 (MQ=255)                                                                                                                                                aCGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCaa                                                                      <  1:596668/86‑1 (MQ=255)                                                                                                                                                    cgcgGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAata   <  3:382869/149‑1 (MQ=255)                                                                                                                                                     GCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAatat  <  2:409665‑M1/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     TCAGCAGCTCATTGATTCGCACTTCCCGCTCCGCTTTGTCGTGACCGAACAGGCGAGCGAAAAAATCGACGTTTTCATACACCGACAAGGTGTGGTAGAGGTTTTTGCCCAGCCCCTGCGGCATCCAGGCGATGCGCGGGCAGACGTCGCGGCGATGCTTCGGGTCGCGCATATCGCCGCCCAGCACCATCACATTGCCCTGTTCAATGACGCGGGCACCGGAAATCAACGACAACAAGCTCGACTTCCCGACGCCGTCCGGGCCAATCAGCCCGACCATACAGCGGGCCGGAATAT  >  NC_000913/3629142‑3629438

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.