New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	618054 =	48 (0.740)	3 (0.050)	3/234	NT	7.0%	intergenic (+16/‑200)	entF/fepE	enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains
	?	NC_000913	618087 =	37 (0.630)					intergenic (+49/‑167)	entF/fepE	enterobactin synthase multienzyme complex component, ATP‑dependent/regulator of length of O‑antigen component of lipopolysaccharide chains

GCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGAC  >  NC_000913/617939‑618233                                                                                                                                                     |                                                                                                                                                   gCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGtttt                                                                                                                                                    >  3:566028/1‑149 (MQ=255)    ggATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAACTTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTa                                                                                                                                                 >  3:74661/1‑149 (MQ=255)    ggATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTa                                                                                                                                                 >  2:167211/1‑149 (MQ=255)      atatCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTAtt                                                                                                                                               <  2:146053/149‑1 (MQ=255)         tctatcGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTAtttgt                                                                                                                                            <  1:349687/149‑1 (MQ=255)         tctatcGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTAATCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTAtttgt                                                                                                                                            <  3:354104/149‑1 (MQ=255)           tatcGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTAtttgttt                                                                                                                                          >  1:455859/1‑149 (MQ=255)               gTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAACTTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGAtt                                                                                                                                      <  4:74661/149‑1 (MQ=255)               ataattatccgaagctgaagtttgtaaattccttccactgaatgcaacattcactctatttcagagaaatattcatcaaacctataaatcaaacaaataaaaaacccataattacagaacataattatgggtttTTTATTTGTTTGAt                                                                                                                                       <  4:359181‑M2/14‑1 (MQ=255)               ataattatccgaagctgaagtttgtaaattccttccactgaatgcaacattcactctatttaagagaaatattcatcaaacctataaatcaaacaaataaaaaacccataattacagaaaataattgtgggtttTTTATTTGTTTGAt                                                                                                                                       >  3:359181‑M2/135‑148 (MQ=255)                tCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGAttt                                                                                                                                     >  1:220418/1‑149 (MQ=255)                tCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGAttt                                                                                                                                     >  4:85256/1‑149 (MQ=255)                   ggATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTtata                                                                                                                                  <  1:92145/149‑1 (MQ=255)                   ggATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTtata                                                                                                                                  <  2:71475/149‑1 (MQ=255)                           cgcATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTtgat                                                                                                                          <  1:510099/149‑1 (MQ=255)                              aTGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGaa                                                                                                                       <  1:3952/149‑1 (MQ=255)                                gtgGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAata                                                                                                                     >  4:84654/1‑149 (MQ=255)                                      attatCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTtctc                                                                                                               >  3:563461/1‑149 (MQ=255)                                       ttatCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTctct                                                                                                              >  3:508202/1‑149 (MQ=255)                                        tatCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCtt                                                                                                             <  1:99165/149‑1 (MQ=255)                                              tcCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATag                                                                                                       >  1:57069/1‑149 (MQ=255)                                               ccAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATaga                                                                                                      <  3:240621/149‑1 (MQ=255)                                                        attGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGGTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGtt                                                                                             >  2:576514/2‑149 (MQ=255)                                                             aaaaaTTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCAtt                                                                                        >  1:374990/1‑149 (MQ=255)                                                                 aTTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGt                                                                                    >  2:36652/1‑149 (MQ=255)                                                                     ggCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTggaa                                                                                <  1:167211/149‑1 (MQ=255)                                                                      gCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTggaag                                                                               >  3:302694/1‑149 (MQ=255)                                                                         gATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTggaaggaa                                                                            <  2:455859/149‑1 (MQ=255)                                                                         gATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTggaaggaa                                                                            <  2:323553/149‑1 (MQ=255)                                                                              ttCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTAc                                                                       >  1:28976/1‑149 (MQ=255)                                                                                 gcgcAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACaaa                                                                    <  1:67657/149‑1 (MQ=255)                                                                                    cAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACtt                                                                 <  4:563461/149‑1 (MQ=255)                                                                                     aaCGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTc                                                                <  3:177922/149‑1 (MQ=255)                                                                                        gCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGc                                                             <  2:374990/149‑1 (MQ=255)                                                                                          tAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCtt                                                           >  4:518064/1‑149 (MQ=255)                                                                                           aaaCAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTc                                                          <  4:268950/149‑1 (MQ=255)                                                                                                 gTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGtt                                                                                             >  2:531910/1‑108 (MQ=255)                                                                                                 gTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGtt                                                                                             <  1:531910/108‑1 (MQ=255)                                                                                                    aaTTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTc                                                                >  1:275271/1‑134 (MQ=255)                                                                                                    aaTTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTc                                                                <  2:275271/134‑1 (MQ=255)                                                                                                      atcaaacaaataaaAAACCCATAATTATGTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTGAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTAt                                                <  4:359181‑M1/134‑1 (MQ=255)                                                                                                      atcaaacaaataaaAAACCCACAATTATTTTCTGTAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTAt                                                >  3:359181‑M1/15‑148 (MQ=255)                                                                                                       tAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCa                                              <  2:220418/149‑1 (MQ=255)                                                                                                                   taAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTaaa                                  <  3:85256/149‑1 (MQ=255)                                                                                                                      ACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTggaag                                                                               >  1:316913‑M1/1‑101 (MQ=255)                                                                                                                      ACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTggaag                                                                               <  2:316913‑M1/101‑1 (MQ=255)                                                                                                                       CCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGa                              >  3:432455‑M1/1‑149 (MQ=255)                                                                                                                        ccataattattttctgtaattatgggtttTTTATTTGTTTGATTTATGGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAg                             >  3:400086‑M2/30‑149 (MQ=255)                                                                                                                        CCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAg                             >  4:302694‑M1/1‑149 (MQ=255)                                                                                                                              TTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGt                       <  1:434182‑M1/149‑1 (MQ=255)                                                                                                                                       ataatTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTc              <  2:28976/149‑1 (MQ=255)                                                                                                                                               gggtttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTAtt      <  4:508202‑M2/143‑1 (MQ=255)                                                                                                                                               gggtttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTAtt      >  3:52029‑M2/7‑149 (MQ=255)                                                                                                                                                ggtttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTGAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTg     >  2:49683‑M2/6‑149 (MQ=255)                                                                                                                                                ggtttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTg     <  4:90958‑M2/144‑1 (MQ=255)                                                                                                                                                   ttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGAc  >  4:462872‑M2/3‑149 (MQ=255)                                                                                                                                                   ttTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGAc  <  2:434182‑M2/147‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   GCTGGATATCTATCGTCAGGATTGTGCGCATGTGGATATTATCTCTCCAGGGACGTTTGAAAAAATTGGGCCGATTATTCGCGCAACGCTAAACAGGTAAATTAATATTATTTATAAACCCATAATTACAGAAAATAATTATGGGTTTTTTATTTGTTTGATTTATAGGTTTGATGAATATTTCTCTTAAATAGAGTGAATGTTGCATTCAGTGGAAGGAATTTACAAACTTCAGCTTCGGATAATTATCACCAACTGGTAAAGTGAGCGCCGTGGAGATTTCCCCCTATTGGAC  >  NC_000913/617939‑618233

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.