Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | NC_000913 | 4,511,306 | A→T | 7.0% | L51H (CTT→CAT) | fecE ← | ferric citrate ABC transporter ATPase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NC_000913 | 4,511,306 | 0 | A | T | 7.0% | 193.5 / 5.2 | 57 | L51H (CTT→CAT) | fecE | ferric citrate ABC transporter ATPase |
Reads supporting (aligned to +/- strand): ref base A (28/25); new base T (2/2); total (30/27) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
ACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGATTTTCAGTTCGTAAA > NC_000913/4511158‑4511452 | aCCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTaaaa < 3:466704/149‑1 (MQ=255) tACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCcg < 4:221917/149‑1 (MQ=255) gAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGa > 1:526699/1‑149 (MQ=255) ccAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCTTTTAATGCcgcagtctg < 2:552876/149‑7 (MQ=255) aGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACa < 1:484491/149‑1 (MQ=255) gCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAg > 2:516887/1‑149 (MQ=255) gCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAg < 3:379848/149‑1 (MQ=255) tCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGtt > 3:539453/1‑149 (MQ=255) cTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTa > 1:182497/1‑149 (MQ=255) cTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGc > 4:127469/1‑149 (MQ=255) ctctGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTcc < 1:398544/149‑1 (MQ=255) ctctGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTcc > 4:198332/1‑149 (MQ=255) ctctGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTcc > 1:307098/1‑149 (MQ=255) tctGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTccc < 1:285301/149‑1 (MQ=255) gCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCaa < 2:307098/149‑1 (MQ=255) gTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAAcc > 2:45012/1‑149 (MQ=255) gTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAAcc > 3:81404/1‑149 (MQ=255) ttAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCg > 3:238183/1‑149 (MQ=255) tAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGt < 1:45012/149‑1 (MQ=255) aTGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGTCGCGGAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAg > 4:45127/1‑149 (MQ=255) tGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAgg > 2:589/1‑149 (MQ=255) ggTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGa < 4:539453/149‑1 (MQ=255) gCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCg > 1:574141/1‑149 (MQ=255) tGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGAt > 1:294369/1‑149 (MQ=255) aGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTATAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCa < 3:236647/149‑1 (MQ=255) aGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCa < 3:198332/149‑1 (MQ=255) gcGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTg < 3:524336/149‑1 (MQ=255) cGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGa < 1:391311/149‑1 (MQ=255) gggCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGtt > 4:214543/1‑149 (MQ=255) gCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTa > 3:7496/1‑117 (MQ=255) gCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTa < 4:7496/117‑1 (MQ=255) ccAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGc < 2:238562/149‑1 (MQ=255) gATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGa > 1:339127/1‑149 (MQ=255) gagaGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAAc < 3:127469/149‑1 (MQ=255) agCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAAcgtc < 4:121099/149‑1 (MQ=255) cATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAAcgtcgt < 2:116070/149‑1 (MQ=255) tttATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAg > 3:285504/1‑149 (MQ=255) aTGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTAc < 1:365837/149‑1 (MQ=255) gggATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCt > 4:246834/1‑149 (MQ=255) ggATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCtt < 1:450153/149‑1 (MQ=255) gATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTtg > 4:16180/1‑149 (MQ=255) aTCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTtgtctg > 1:493016/1‑149 (MQ=255) tCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCTGCGTAAAACAGTTTAACAGCGTAGATTTCCCGCAACAGCTAGGACCGATCAGGGCGGTGATCTTCCCAGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTtgtctgt > 3:361386/1‑149 (MQ=255) cGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTtgtctgtc < 3:246834/149‑1 (MQ=255) tACGGTGCCAGTCTGCGGCATTAAAAGCCGTGAACAACAGTTTAACAGCGTCGATTGCCCGCAACCGTTAGGACCGATCTGGGCGGTGATCTTCCCCGTAGGCAGTGGGAGTGAAACGTCGTTAAGTACCTCGTCTGTCCCGTAACTGa < 4:361386/149‑1 (MQ=255) tACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGa < 2:493016/149‑1 (MQ=255) tACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGa > 2:282482/1‑149 (MQ=255) aCGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGAc < 2:574141/149‑1 (MQ=255) aCGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGAc > 4:330569/1‑149 (MQ=255) ggTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCg > 1:22786/1‑149 (MQ=255) gtttttcgCGGCTTTTAATGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAg > 2:4754/8‑149 (MQ=255) ttttcgCGGCTTTTAATGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGAt > 4:105338/6‑149 (MQ=255) aGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGAt > 1:180740/1‑149 (MQ=255) tGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCa > 2:75005/1‑142 (MQ=255) tGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCa < 1:75005/142‑1 (MQ=255) gCGGCTTTTAATGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGATTTTCa < 3:105338/149‑1 (MQ=255) aTTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGGCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGACTTTCAGTTCg > 1:114028/1‑149 (MQ=255) ttAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGATTTTCAGTTCGt < 1:495181/149‑1 (MQ=255) aaaGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGATTTTCAGTTCGTaaa < 2:542318/149‑1 (MQ=255) aaaGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGATTTTCAGTTCGTaaa < 4:91127/149‑1 (MQ=255) | ACCATACGAAACCAGCTCCTGGACTGTGATCCCCTCTGGCGTTAAATGGTGCTGAGGCAGCAGCGAAAGCCTGCGGGCCAACTGGCGCGATGAGAGCATATTTATGGGATTATCGCCGAGAAATACGGTGCCAGACTGCGGCATTAAAAGCCGCGAAAAACAGTTTAACAGCGTCGATTTCCCGCAACCGTTAGGACCGATCAGGGCGGTGATCTTCCCCGTTGGCAGTGAGAGTGAAACGTCGTTAAGTACCTTGTCTGTCCCGTAACTGACCGTCAGATTTTCAGTTCGTAAA > NC_000913/4511158‑4511452 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |