New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3721998 =484 (4.610)4 (0.040) 4/244 NT 0.90% noncoding (1366/1443 nt) IS150 repeat region
?NC_000913 3722033 = 425 (4.320)noncoding (1401/1443 nt) IS150 repeat region
Rejected: Frequency below/above cutoff threshold.

Only 100 of 582 total aligned reads displayed.

TGGATAATGCTGTGGTGGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTC  >  NC_000913/3721850‑3722146
                                                                                                                                                    |                                                                                                                                                      
 ggATAATGCTGTGGTGGAGTGTTTCTTTGGAACCTTAATGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTaaaa                                                                                                                                                        <  1:575800/148‑1 (MQ=255)
 aaacttattaagctagaatagccacgggtgcttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatata                                                                                                                                                        >  2:42064‑M1/148‑148 (MQ=255)
   aTAATGCTGTGGTGGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAgg                                                                                                                                                      >  1:733338/1‑148 (MQ=255)
    cttattaagctagaatagccacgggtgcttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatatAGGt                                                                                                                                                     <  2:719673‑M1/4‑1 (MQ=255)
    cttattaagctagaatagccacgggtgcttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatatAGGTc                                                                                                                                                    >  4:657350‑M1/145‑149 (MQ=255)
     aaTGTTGTGGTGGAGTGTTTCATTGGAACCTTAATGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTc                                                                                                                                                    <  2:884150/148‑1 (MQ=255)
     aaTGCTGTGGTGGAGTGTTTCTTTGGAACCTTCAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCt                                                                                                                                                   <  4:778270/149‑1 (MQ=255)
     aaTGCTGTGGTGGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAGCTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCt                                                                                                                                                   <  4:539396/149‑1 (MQ=255)
      tattaagctagaatagccacgggtgcttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatatAGGTCt                                                                                                                                                   <  2:191568‑M1/6‑1 (MQ=255)
       attaagctagaatagccacgggtgcttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatatAGGTCTGa                                                                                                                                                 >  3:88843‑M1/142‑149 (MQ=255)
        ttaagctagaatagccacgggtgcttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatatAGGTCTGa                                                                                                                                                 >  1:963339‑M1/141‑148 (MQ=255)
        gCTGTGGTGGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGAc                                                                                                                                                <  3:724755/149‑1 (MQ=255)
              gtggAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAATAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACACC‑A‑At                                                                                                                                        <  4:788652/149‑1 (MQ=255)
               tggAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑Att                                                                                                                                       <  3:229120/149‑1 (MQ=255)
                ggAGTGCTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGGATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑Att                                                                                                                                       >  1:3540/1‑148 (MQ=255)
                  aGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGaa                                                                                                                                    <  4:574551/149‑1 (MQ=255)
                  aGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGaa                                                                                                                                    <  4:387747/149‑1 (MQ=255)
                    tgtTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCt                                                                                                                                                   >  3:783174/1‑134 (MQ=255)
                    tgtTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGAc                                                                                                                                                >  3:80352/1‑137 (MQ=255)
                      tttCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATc                                                                                                                                >  4:426939/1‑149 (MQ=255)
                       ttCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATc                                                                                                                                <  1:471257/148‑1 (MQ=255)
                       ttCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATc                                                                                                                                >  1:2896/1‑148 (MQ=255)
                         cTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGa                                                                                                                             <  3:45417/149‑1 (MQ=255)
                           ttGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGaa                                                                                                                            <  2:558574/148‑1 (MQ=255)
                              gAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAg                                                                                                                        >  4:118589/1‑149 (MQ=255)
                               cttgagactgtttgtctcaggtattcaccgaaaggcagacagagaaaagccccacctgactataaatcaaagtttgtactgaccccaaaaagttggacagttaaacacgaggcatatAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAg                                                                                                                        >  2:314259‑M1/118‑148 (MQ=255)
                                aCCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATAATGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGa                                                                                                                       >  2:689419/1‑148 (MQ=255)
                                   ttAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCta                                                                                                                   >  3:858914/1‑149 (MQ=255)
                                   ttAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCt                                                                                                                    >  2:744102/1‑148 (MQ=255)
                                      aaGTTGGGGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCCAACTGAAGGATGCTTTTACGGAATATATTGAATACTACAACAGGAGAAGAATTAGCCTGGAATTAAAAGGTTTGACTCC‑A‑AATGAATATCGGAATCAGACCtata                                                                                                                 >  2:124312/1‑148 (MQ=255)
                                          cGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑At                                                                                                                                        >  2:935207/1‑121 (MQ=255)
                                              gtgtTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCgtg                                                                                                        >  4:805896/1‑149 (MQ=255)
                                               tgtTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCgtgt                                                                                                       >  4:718736/1‑149 (MQ=255)
                                                        cTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTaa                                                                                                   <  1:11003/144‑1 (MQ=255)
                                                        cTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGt                                                                                               >  2:669584/1‑148 (MQ=255)
                                                        cTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGt                                                                                               <  1:229676/148‑1 (MQ=255)
                                                           gatgaGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCa                                                                                            <  1:481226/148‑1 (MQ=255)
                                                              gaGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACtt                                                                                        >  4:670124/1‑149 (MQ=255)
                                                                  tCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTg                                                                                                                                                  <  1:507690/89‑1 (MQ=255)
                                                                  tCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTg                                                                                                                                                  >  2:507690/1‑89 (MQ=255)
                                                                  tCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGGCCTATATGCCTCGTGTTTAACTGTCCAACttttt                                                                                     <  1:916036/148‑1 (MQ=255)
                                                                  tCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACttttt                                                                                     <  1:75808/148‑1 (MQ=255)
                                                                   cAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTg                                                                                    <  2:633643/148‑1 (MQ=255)
                                                                    aGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTggg                                                                                  <  3:409194/149‑1 (MQ=255)
                                                                    aGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTggg                                                                                  >  3:509023/1‑149 (MQ=255)
                                                                        atatAAGCGAACTGAAGGATGCTGTTACGGAATATATTGGATACTACAACAGCAGAGGAATTCGCCTGAAATTACAGGCTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCTTCGTGTTTAACTGTCCCACTTTCTGGGGTCa                                                                              >  3:590638/1‑149 (MQ=255)
                                                                           taAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGt                                                                            <  1:598002/148‑1 (MQ=255)
                                                                           taAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTa                                                                           <  3:15292/149‑1 (MQ=255)
                                                                            aaGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTa                                                                           >  2:32822/1‑148 (MQ=255)
                                                                                    tGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGaa                                                                                                                                    >  3:925076/1‑83 (MQ=255)
                                                                                     gAAGGATGCTGTTATGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg                                                                  >  1:191568/1‑148 (MQ=255)
                                                                                     gAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTg                                                                  <  1:883696/148‑1 (MQ=255)
                                                                                     gAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa                                                                 <  4:937057/149‑1 (MQ=255)
                                                                                      aaataTGCTTTCACCGAATATATTGAATACTAAAACAGCAGAATAATTTGCTTGAAATTAAAATATGTGACTAC‑T‑AATACATATCGGAATCAGACATAAACGCCTGGTGTTTAACGATCAAACGTTTTGGGGTCAGTACAAACTTTGa                                                                 <  2:255372/144‑1 (MQ=255)
                                                                                      aaGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGa                                                                 <  2:854887/148‑1 (MQ=255)
                                                                                      aaGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGAt                                                                >  3:368548/1‑149 (MQ=255)
                                                                                           tGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTtata                                                           <  4:524813/149‑1 (MQ=255)
                                                                                               gTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTc                                                        >  1:850549/1‑148 (MQ=255)
                                                                                                ttACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCa                                                       <  1:32752/148‑1 (MQ=255)
                                                                                                  aCGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAgg                                                     <  1:27143/148‑1 (MQ=255)
                                                                                                  aCGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAgg                                                     <  1:587972/148‑1 (MQ=255)
                                                                                                   cGGAATATATTGAATATTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg                                                   <  4:148166/149‑1 (MQ=255)
                                                                                                    tgAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAGATTAAAAGGTCTGACTAC‑A‑ATTGAATATCGGAAGCAGACCTATATGCCTCGTGTGTCACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTg                                                   <  2:224089/147‑1 (MQ=255)
                                                                                                        tatatTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGa                                                                                                                       >  4:318798/1‑76 (MQ=255)
                                                                                                        tatatTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGa                                                                                                                       <  3:318798/76‑1 (MQ=255)
                                                                                                         atatTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCt                                              <  1:70265/148‑1 (MQ=255)
                                                                                                         atatTGAATACTACAACAGCAGAAGAACTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCtt                                             <  3:641637/149‑1 (MQ=255)
                                                                                                            ttGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACttttt                                                                                     >  4:508457/1‑106 (MQ=255)
                                                                                                              gAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTtct                                         >  2:474479/1‑148 (MQ=255)
                                                                                                               aaTACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTctct                                       <  4:602203/149‑1 (MQ=255)
                                                                                                                aTACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACttttt                                                                                     >  1:808507/1‑102 (MQ=255)
                                                                                                                  actacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCta                                                                                                                   <  3:668851/70‑1 (MQ=255)
                                                                                                                  actacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc                                    <  4:737875/149‑1 (MQ=255)
                                                                                                                   ccaaaaagttggacagttaaacacgaggcatatAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGa                                                                                                                       >  1:540622‑M1/34‑65 (MQ=255)
                                                                                                                    tacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg                                  >  3:536018/1‑149 (MQ=255)
                                                                                                                    tacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtctg                                  <  3:905964/149‑1 (MQ=255)
                                                                                                                    tacAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtct                                   >  1:392186/1‑148 (MQ=255)
                                                                                                                     acaacaGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGc                                 <  4:475271/149‑1 (MQ=255)
                                                                                                                        acaGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTtat                                                            <  2:592886/119‑1 (MQ=255)
                                                                                                                         cagcagAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCtata                                                                                                                 >  1:120338/1‑65 (MQ=255)
                                                                                                                           gcagAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc                            <  1:64941/148‑1 (MQ=255)
                                                                                                                            cagAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTc                            >  1:941244/1‑147 (MQ=255)
                                                                                                                             agaagaATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGt                         <  4:346917/149‑1 (MQ=255)
                                                                                                                              gaagaaTTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTg                        >  3:699842/1‑149 (MQ=255)
                                                                                                                              gaagaaTTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTg                        <  4:179388/149‑1 (MQ=255)
                                                                                                                               aagaaTTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGa                       >  3:281092/1‑149 (MQ=255)
                                                                                                                                 gaaTTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGaa                      <  2:813109/148‑1 (MQ=255)
                                                                                                                                    ttAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATAcc                  >  3:118951/1‑149 (MQ=255)
                                                                                                                                     tAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATAcc                  <  2:282291/148‑1 (MQ=255)
                                                                                                                                       gCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTga               <  3:7478/149‑1 (MQ=255)
                                                                                                                                       gCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTga               <  4:271488/149‑1 (MQ=255)
                                                                                                                                       gCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTg                <  2:38659/148‑1 (MQ=255)
                                                                                                                                       gCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTg                <  2:782286/148‑1 (MQ=255)
                                                                                                                                          tGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATa                    >  4:901169/1‑141 (MQ=255)
                                                                                                                                          cgaggcatatAGGTCTGATTCCGATATTCAAT‑T‑GGAGTCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTgaga             <  1:687445‑M1/138‑1 (MQ=255)
                                                                                                                                               ttgaaaGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCCGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACa       >  4:848747/4‑149 (MQ=255)
                                                                                                                                               ttAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTg                                                                                    <  1:411495/72‑1 (MQ=255)
                                                                                                                                                tAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc                                    >  2:165077/1‑119 (MQ=255)
                                                                                                                                                tAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCtctgtc                                    <  1:165077/119‑1 (MQ=255)
                                                                                                                                                    AGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGtctc  <  3:387400‑M1/149‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                      
TGGATAATGCTGTGGTGGAGTGTTTCTTTGGAACCTTAAAGTCGGAGTGTTTTTATCTTGATGAGTTCAGTAATATAAGCGAACTGAAGGATGCTGTTACGGAATATATTGAATACTACAACAGCAGAAGAATTAGCCTGAAATTAAAAGGTCTGACTCC‑A‑ATTGAATATCGGAATCAGACCTATATGCCTCGTGTTTAACTGTCCAACTTTTTGGGGTCAGTACAAACTTTGATTTATAGTCAGGTGGGGCTTTTCTCTGTCTGCCTTTCGGTGAATACCTGAGACAAACAGTCTC  >  NC_000913/3721850‑3722146

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.