mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,993,337 | 0 | T | . | 74.7% | 326.3 / 227.8 | 188 | coding (2185/2547 nt) | cyaA | adenylate cyclase |
| * | NC_000913 | 3,993,338 | 0 | T | . | 74.7% | 327.4 / 226.8 | 188 | coding (2186/2547 nt) | cyaA | adenylate cyclase |
| * | NC_000913 | 4,154,916 | 0 | G | A | 70.2% | 141.5 / 60.1 | 96 | intergenic (‑69/‑85) | argE/argC | acetylornithine deacetylase/N‑acetyl‑gamma‑glutamylphosphate reductase, NAD(P)‑binding |
| * | NC_000913 | 1,684,564 | 0 | C | A | 64.7% | 92.9 / 125.4 | 119 | V102V (GTC→GTA) | tus | inhibitor of replication at Ter, DNA‑binding protein |
| * | NC_000913 | 3,992,474 | 0 | C | A | 20.7% | 422.4 / 82.6 | 180 | S441* (TCA→TAA) | cyaA | adenylate cyclase |
| * | NC_000913 | 4,296,268 | 0 | T | C | 20.0% | 102.4 / 17.5 | 62 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 48 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3721045 = | 677 (4.090) | 79 (0.480) | 55/514 | 2.2 | 15.5% | noncoding (413/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | = 3839774 | 187 (1.130) | coding (220/819 nt) | nlpA | cytoplasmic membrane lipoprotein‑28 | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 11 (0.070) | 10/516 | 11.7 | 6.7% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1293036 | 154 (0.930) | intergenic (‑114/‑491) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 1293028 = | 157 (0.950) | 10 (0.060) | 8/516 | 12.6 | 6.0% | intergenic (‑106/‑499) | hns/tdk | global DNA‑binding transcriptional dual regulator H‑NS/thymidine kinase/deoxyuridine kinase |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | 4542682 = | 73 (0.440) | 7 (0.040) | 7/498 | 12.9 | 7.2% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | 4542996 = | 109 (0.680) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 4542690 | 77 (0.470) | 5 (0.030) | 5/498 | 14.1 | 5.2% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913 | = 4542986 | 109 (0.680) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913 | = 381689 | NA (NA) | 5 (0.030) | 5/498 | 14.1 | NA | noncoding (430/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381743 | NA (NA) | noncoding (484/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 3736715 = | 815 (4.930) | 6 (0.040) | 5/504 | 14.2 | 0.77% | coding (463/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | 3736730 = | 747 (4.620) | coding (448/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | 4207431 = | 145 (0.880) | 5 (0.030) | 5/508 | 14.3 | 3.4% | coding (102/1590 nt) | purH | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase |
| ? | NC_000913 | = 4207427 | 142 (0.870) | coding (106/1590 nt) | purH | IMP cyclohydrolase and phosphoribosylaminoimidazolecarboxamide formyltransferase | |||||
| * | ? | NC_000913 | 2765420 = | 124 (0.750) | 3 (0.020) | 3/428 | 14.3 | 2.9% | intergenic (‑267/+93) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein |
| ? | NC_000913 | = 2765411 | 99 (0.720) | intergenic (‑258/+102) | yfjL/yfjM | CP4‑57 putative defective prophage, DUF4297/DUF1837 polymorphic toxin family protein/CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 1253930 | 122 (0.740) | 5 (0.030) | 5/510 | 14.3 | 3.9% | coding (2023/2868 nt) | ycgV | putative adhesin |
| ? | NC_000913 | = 1253933 | 123 (0.750) | coding (2020/2868 nt) | ycgV | putative adhesin | |||||