New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 286732	97 (0.830)	5 (0.050)	5/248	NT	5.2%	coding (1338/1383 nt)	yagG	CP4‑6 prophage; putative sugar transporter
	?	NC_000913	= 286752	91 (0.820)					coding (1358/1383 nt)	yagG	CP4‑6 prophage; putative sugar transporter

CTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATGTTCATCATGCTGTCGCTCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/286613‑286732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcgTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGA  <  NC_000913/286752‑286605                                                                                                                                                                                                                                                                              CTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATGTTCATCATGCTGTCGCTCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCG                                                                                                                         <  4:823440/149‑1   GTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATGTTCATCATGCTGTCGCTCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGT                                                                                                                       <  3:931713/149‑1           TGGTGCCGGTGGTGCTCTACGCGGGCATGTTCATCATGCTGTCGCTCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATC                                                                                                               <  3:424733/149‑1                                                        TCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAG                                                                                                             >  3:867833/1‑106                                                        TCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAG                                                                                                             <  4:867833/106‑1                                                                                                                  CGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAA        <  1:110543/149‑1                                                                                                                  CGCGGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAA        <  1:530917/149‑1                                                                                                                     GGCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTT     >  4:310180/1‑149                                                                                                                      GCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTT    <  1:46021/149‑1                                                                                                                      GCGTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTT    >  3:207764/1‑149                                                                                                                        GTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGA  <  1:1054861/149‑1                                                                                                                        GTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGA  <  2:56405/149‑1                                                                                                                                                                                                                                                                              CTGTTCTGCGTGGTGCCGGTGGTGCTCTACGCGGGCATGTTCATCATGCTGTCGCTCTACAAGCTCACCGATGCCCGCGTGGAGGCCATCAGCCGGCAGCTGATTAAGCACCGCGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/286613‑286732 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcggcgTCGGGAACGGCCTCGCCCTGCGCCGCGCGGTGCTTAATCAGCTGCCGGCTGATGGCCTCCACGCGGGCATCGGTGAGCTTGTAGAGCGACAGCATGATGAACATGCCCGCGTAGAGCACCACCGGCACCACGCAGAACAGAATTTTGA  <  NC_000913/286752‑286605

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.