mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.3% | 108.2 / 21.0 | 64 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 12 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 279163 = | NA (NA) | 90 (0.590) | 6/522 | 12.9 | 52.3% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 2760086 | 82 (0.540) | coding (1102/1410 nt) | yfjI | CP4‑57 prophage; uncharacterized protein | |||||
| * | ? | NC_000913 | = 3728677 | 439 (2.890) | 4 (0.030) | 4/508 | 14.0 | 0.93% | coding (695/1455 nt) | xylB | xylulokinase |
| ? | NC_000913 | = 3728685 | 425 (2.880) | coding (687/1455 nt) | xylB | xylulokinase | |||||
| * | ? | NC_000913 | 3370305 = | 142 (0.940) | 4 (0.030) | 4/510 | 14.1 | 2.9% | coding (46/876 nt) | nanK | N‑acetylmannosamine kinase |
| ? | NC_000913 | 3370328 = | 125 (0.840) | coding (23/876 nt) | nanK | N‑acetylmannosamine kinase | |||||
| * | ? | NC_000913 | 4614132 = | 127 (0.840) | 3 (0.020) | 3/504 | 14.7 | 2.5% | coding (652/780 nt) | yjjV | putative DNase |
| ? | NC_000913 | 4614163 = | 116 (0.790) | coding (683/780 nt) | yjjV | putative DNase | |||||
| * | ? | NC_000913 | = 3812475 | 465 (3.150) | 6 (0.040) +CAG |
3/502 | 14.7 | 1.3% | coding (85/669 nt) | yicR | UPF0758 family protein |
| ? | NC_000913 | 3812476 = | 475 (3.130) | coding (84/669 nt) | yicR | UPF0758 family protein | |||||
| * | ? | NC_000913 | 3736656 = | 677 (4.460) | 3 (0.020) | 3/502 | 14.7 | 0.46% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 660 (4.520) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | 2646725 = | 130 (0.860) | 3 (0.020) | 3/504 | 14.7 | 2.4% | coding (601/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein |
| ? | NC_000913 | 2646923 = | 123 (0.840) | coding (403/2313 nt) | pbpC | penicillin‑insensitive murein repair transglycosylase; inactive transpeptidase domain protein | |||||
| * | ? | NC_000913 | 2188655 = | 155 (1.020) | 3 (0.020) | 3/514 | 14.9 | 2.2% | coding (2256/2481 nt) | yehB | putative outer membrane protein |
| ? | NC_000913 | = 2190166 | 118 (0.790) | coding (745/2481 nt) | yehB | putative outer membrane protein | |||||
| * | ? | NC_000913 | 1591649 = | 106 (0.700) | 3 (0.020) | 3/512 | 14.9 | 2.8% | coding (528/1323 nt) | hipA | inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase |
| ? | NC_000913 | = 1591645 | 104 (0.700) | coding (532/1323 nt) | hipA | inactivating GltX kinase facilitating persister formation; toxin of HipAB TA pair; autokinase | |||||
| * | ? | NC_000913 | = 3819863 | 472 (3.110) | 3 (0.020) | 3/520 | 15.0 | 0.64% | coding (1308/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent |
| ? | NC_000913 | = 3819868 | 468 (3.090) | coding (1303/1683 nt) | ligB | DNA ligase, NAD(+)‑dependent | |||||