mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 23.2% | 108.7 / 14.3 | 60 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 3736656 = | 738 (5.360) | 5 (0.040) | 5/500 | 11.5 | 0.69% | coding (522/825 nt) | bax | putative glucosaminidase |
| ? | NC_000913 | = 3736652 | 723 (5.470) | coding (526/825 nt) | bax | putative glucosaminidase | |||||
| * | ? | NC_000913 | = 2018435 | 96 (0.740) | 8 (0.060) +GCCTGGCGGCAAA |
3/462 | 12.3 | 7.7% | coding (50/1128 nt) | fliK | flagellar hook‑length control protein |
| ? | NC_000913 | 2018436 = | 100 (0.730) | coding (51/1128 nt) | fliK | flagellar hook‑length control protein | |||||
| * | ? | NC_000913 | = 4468084 | 158 (1.190) | 6 (0.050) +GCAATACT |
3/484 | 12.6 | 3.6% | coding (460/2697 nt) | mgtA | magnesium transporter |
| ? | NC_000913 | 4468085 = | 167 (1.210) | coding (461/2697 nt) | mgtA | magnesium transporter | |||||
| * | ? | NC_000913 | = 3689538 | 95 (0.710) | 7 (0.050) +GCT |
3/500 | 12.8 | 6.8% | coding (724/1107 nt) | bcsZ | endo‑1,4‑D‑glucanase |
| ? | NC_000913 | 3689539 = | 95 (0.690) | coding (723/1107 nt) | bcsZ | endo‑1,4‑D‑glucanase | |||||
| * | ? | NC_000913 | = 2429529 | 100 (0.750) | 7 (0.050) +CTT |
3/500 | 12.8 | 6.4% | coding (710/1518 nt) | purF | amidophosphoribosyltransferase |
| ? | NC_000913 | 2429530 = | 105 (0.760) | coding (709/1518 nt) | purF | amidophosphoribosyltransferase | |||||
| * | ? | NC_000913 | 3970421 = | 171 (1.240) | 3 (0.020) | 3/502 | 12.9 | 1.8% | coding (289/1131 nt) | wecB | UDP‑N‑acetyl glucosamine‑2‑epimerase |
| ? | NC_000913 | = 3970417 | 165 (1.240) | coding (285/1131 nt) | wecB | UDP‑N‑acetyl glucosamine‑2‑epimerase | |||||
| * | ? | NC_000913 | = 3773239 | 565 (4.110) | 3 (0.020) | 3/504 | 12.9 | 0.54% | coding (959/1914 nt) | mtlA | mannitol‑specific PTS enzyme: IIA, IIB and IIC components |
| ? | NC_000913 | = 3774141 | 565 (4.240) | coding (1861/1914 nt) | mtlA | mannitol‑specific PTS enzyme: IIA, IIB and IIC components | |||||
| * | ? | NC_000913 | = 2582291 | 146 (1.060) | 4 (0.030) | 3/506 | 12.9 | 2.9% | coding (487/1044 nt) | ypfG | DUF1176 family protein |
| ? | NC_000913 | 2582424 = | 123 (0.920) | coding (354/1044 nt) | ypfG | DUF1176 family protein | |||||
| * | ? | NC_000913 | 965912 = | 128 (0.930) | 3 (0.020) | 3/504 | 12.9 | 2.3% | coding (1593/2265 nt) | ycaI | ComEC family inner membrane protein |
| ? | NC_000913 | 965944 = | 127 (0.950) | coding (1625/2265 nt) | ycaI | ComEC family inner membrane protein | |||||
| * | ? | NC_000913 | = 2814013 | 159 (1.160) | 3 (0.020) | 3/514 | 13.0 | 1.9% | coding (1398/1539 nt) | emrB | multidrug efflux system protein |
| ? | NC_000913 | 2814017 = | 157 (1.150) | coding (1402/1539 nt) | emrB | multidrug efflux system protein | |||||