| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4438655 | 155 (0.940) | 6 (0.040) | 6/242 | NT | 3.7% | intergenic (+10/+53) | ytfI/ytfJ | uncharacterized protein/putative transcriptional regulator |
| ? | NC_000913 | = 4438666 | 168 (1.100) | intergenic (+21/+42) | ytfI/ytfJ | uncharacterized protein/putative transcriptional regulator | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GATGCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4438499‑4438655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcccctatcGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGCCA < NC_000913/4438666‑4438521 GATGCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATT > 4:135703/1‑149 GCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCC > 4:977759/1‑149 GCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCC < 3:356393/149‑1 GCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCC < 1:830334/149‑1 GCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCC < 1:1119582/149‑1 GATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCT > 2:872398/1‑149 ATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTA > 4:326308/1‑149 ATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTA < 4:1204404/149‑1 TAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTAT > 1:430976/1‑149 CAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATCGTTATCTATGGGATAGGGGA < 1:1495711/149‑1 AAAGAAAAGATTTGCGAGAAATATGAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATCGTTATCTATGGGATAGGGGAATTAACTCTCTGAGTTC < 3:977759/149‑1 AAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATC < 1:702005/108‑1 AAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATC > 2:702005/1‑108 GAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATCGTTATCTATGGGATAGGGGAATTAA < 4:478310/122‑1 GAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATCGTTATCTATGGGATAGGGGAATTAA > 3:478310/1‑122 GAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATCGTTATCTATGGGATAGGGGAATTAAGT < 3:1194308/88‑1 GAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATCGTTATCTATGGGATAGGGGAATTAAGT > 4:1194308/1‑88 CTATCGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGC < 3:640418/149‑1 CTATCGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGC > 3:749227/1‑149 CTATCGTTATCTATGGGATAGGGGAATGAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGC > 1:1106948/1‑149 TATCGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGCC < 3:316636/149‑1 TATCGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGCC > 1:296407/1‑149 ATCGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGCCA < 1:1015150/149‑1 GATGCGATAGTAAGTGCGAATCTGGCCGCAGATAGCGATATTACCAAAGAAAAGATTTGCGAGAAATATAAATCGACCATTGAGGCGTTTAAAAAAGAGCAACTAGCGTTACCAGTATTAGTTCGGCGTAAGAACTCAGAGACTTAATTCCCCTATC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4438499‑4438655‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcccctatcGTTATCTATGGGATAGGGGAATTAAGTCTCTGAGTTCTTACGCCGAACTAATACTGGTAACGCTAGTTGCTCTTTTTTAAACGCCTCAATGGTCGATTTATATTTCTCGCAAATCTTTTCTTTGGTAATATCGCTATCTGCGGCCA < NC_000913/4438666‑4438521 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |