| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1100826 | NA (NA) | 4 (0.050) | 4/252 | NT | NA | noncoding (6/19 nt) | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences |
| ? | NC_000913 | = 1100833 | NA (NA) | noncoding (13/19 nt) | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences | REP96 (repetitive extragenic palindromic) element; contains 1 REP sequences | |||||
TCGCTGGCGCTTGGGCTGATATTTGGTTACGCAATGAAAAACAGTGGCCTGTGGCTGGCGGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAATGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1100674‑1100826‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaATTATCA‑TCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGCACTACGCGCCGCCAGCCACAGGCCACTGTTTTTCATTGCGTAACCAAATATCA < NC_000913/1100833‑1100690 TCGCTGGCGCTTGGGCTGATATTTGGTTACGCAATGAAAAACAGTGGCCTGTGGCTGGCGGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAATGC < 3:573789/149‑1 CTCACGCTTTCGCTTAAACAGTAAAATGCCGGAATTATCA‑TCCGGCATTTTACTGTT > 3:487264/1‑57 CTCACGCTTTCGCTTAAACAGTAAAATGCCGGAATTATCA‑TCCGGCATTTTACTGTT < 4:487264/57‑1 AAACAGTAAAATGCCGG‑ATGATAATTCCGGCTTTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGCACTACGCGCCGCCAGCCACAGGCCACTGTTTTTCATTGCG > 3:90945/1‑149 GTAAAATGCCGG‑ATGATAATTCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGCACTACGCGCCGCCAGCCACAGGCCACTGTTTTTCATTGCGTAACC > 1:536638/1‑149 CCGGAATTATCA‑TCCGGCATTTGACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGCACTACGCGCCGCCAGCCACAGGCCACTGTTTTTCATTGCGTAACCAAATATCA < 1:602817/149‑1 TCGCTGGCGCTTGGGCTGATATTTGGTTACGCAATGAAAAACAGTGGCCTGTGGCTGGCGGCGCGTAGTGCAAAGACGGCGCACCGTGAGCAGGAAATCAAAAATAAAGCGTGAGGGGCACTCACGCTTTCGCTTAAACAGTAAAATGCCGGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/1100674‑1100826‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gccggaATTATCA‑TCCGGCATTTTACTGTTTAAGCGAAAGCGTGAGTGCCCCTCACGCTTTATTTTTGATTTCCTGCTCACGGTGCGCCGTCTTTGCACTACGCGCCGCCAGCCACAGGCCACTGTTTTTCATTGCGTAACCAAATATCA < NC_000913/1100833‑1100690 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |