New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3222473	68 (0.880)	4 (0.060)	4/238	NT	6.0%	intergenic (+24/‑160)	ebgR/ebgA	transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit
	?	NC_000913	= 3222479	64 (0.920)					intergenic (+30/‑154)	ebgR/ebgA	transcriptional repressor/evolved beta‑D‑galactosidase, alpha subunit

TGCGCATCCATTCCGAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3222319‑3222473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactgtccggcaaAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCCTGACTTCCCATCATCT  <  NC_000913/3222479‑3222334                                                                                                                                                                                                                                                                                                               TGCGCATCCATTCCGAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTC                                                                                                                                                          <  1:489606/149‑1    GCATCCATTCCGAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGG                                                                                                                                                       >  2:615772/1‑149      ATCCATTCCGAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCA                                                                                                                                                     <  2:3729/149‑1      ATCCATTCCGAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCA                                                                                                                                                     >  4:435983/1‑149                     ATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAAAAACGATTGCCGGA                                                                                                                                      <  2:332963/149‑1                      TGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAAAAACGATTGCCGGAC                                                                                                                                     <  3:185623/149‑1                                                                                                                                       CCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAAC                                                                     >  1:699330/1‑100                                                                                                                                       CCCTTACACACTGTCCGGCAATCGTTTTTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAAC                                                                     <  2:699330/100‑1                                                                                                                                                ACTGTCCGGCAAAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCCTGACTTC           <  2:536586/149‑1                                                                                                                                                 CTGTCCGGCAAAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCCTGACTTCC          <  2:552668/149‑1                                                                                                                                                      CGGCAAAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCCTGACTTCCCATCA     >  3:19090/1‑149                                                                                                                                                       GGCAAAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCC                  <  3:670856/135‑1                                                                                                                                                       GGCAAAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCC                  >  4:670856/1‑135                                                                                                                                                         CAAAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCCTGACTTCCCATCATCT  <  4:452215/149‑1                                                                                                                                                                                                                                                                                                               TGCGCATCCATTCCGAGATGATGGGAAGTCAGGGCGTTAACCTGGTGTATGAAAAAGCCCGCGATGGTCGCGCGCTGCCGCTGTTAGTCTTCGTTCCCAGCAAATTAAAACTGCGCGGCACGACCCGTTAAATCCCCTTACACACTGTCCGGCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3222319‑3222473 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cactgtccggcaaAAACGATTGCCGGACAGTGTGTAAGGGGATTTAACGGGTCGTGCCGCGCAGTTTTAATTTGCTGGGAACGAAGACTAACAGCGGCAGCGCGCGACCATCGCGGGCTTTTTCATACACCAGGTTAACGCCCTGACTTCCCATCATCT  <  NC_000913/3222479‑3222334

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.