New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1672789 =	46 (0.600)	5 (0.070)	4/244	NT	11.4%	intergenic (+8/+31)	ydgD/mdtI	putative peptidase/multidrug efflux system transporter
	?	NC_000913	1672815 =	35 (0.490)					intergenic (+34/+5)	ydgD/mdtI	putative peptidase/multidrug efflux system transporter

ATGTTGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAAC  >  NC_000913/1672641‑1672922                                                                                                                                                     |                                                                                                                                      aTGTTGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCaaa                                                                                                                                       <  1:105170/149‑1 (MQ=255)  tGTTGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAAc                                                                                                                                      <  4:518540/149‑1 (MQ=255)  tGTTGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAAc                                                                                                                                      >  3:490805/1‑149 (MQ=255)  cgcttatgcattgtggggcgggtttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagAc                                                                                                                                      >  1:226470‑M1/148‑149 (MQ=255)   gcttatgcattgtggggcgggtttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACg                                                                                                                                     <  3:622824‑M1/3‑1 (MQ=255)     ttatgcattgtggggcgggtttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCt                                                                                                                                   >  1:243776‑M1/145‑149 (MQ=255)     ttatgcattgtggggcgggtttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCt                                                                                                                                   <  1:695988‑M1/5‑1 (MQ=255)     tGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCt                                                                                                                                   <  2:630828/149‑1 (MQ=255)             gATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACa                                                                                                                           <  2:451816/149‑1 (MQ=255)               tGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAgc                                                                                                                         >  2:143646/1‑149 (MQ=255)               tGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGCTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAgc                                                                                                                         >  3:278627/1‑149 (MQ=255)                  cGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGcgcg                                                                                                                      <  3:258822/149‑1 (MQ=255)                   ggCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCgg                                                                                                                     >  1:172419/1‑149 (MQ=255)                      tGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCa                                                                                                                  >  2:343496/1‑149 (MQ=255)                      tGGCAATTAATGGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAGACGCTGCCCGACAGCGCGGGCa                                                                                                                  >  3:386207/1‑149 (MQ=255)                        tttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAGc                                                                                                                >  4:86264‑M1/126‑149 (MQ=255)                        tttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggattggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAGc                                                                                                                <  1:499093‑M1/24‑1 (MQ=255)                        tttggtattgccgccacgttagccgcaggttggatcttgtttggtcaacggttaaatcgtaaaggctggataggcctggtcttgctgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAGc                                                                                                                >  2:499093‑M1/126‑149 (MQ=255)                        gCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGc                                                                                                                <  1:178042/149‑1 (MQ=255)                        gCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGc                                                                                                                <  4:274244/149‑1 (MQ=255)                           attaattGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTc                                                                                                             <  1:630374/149‑1 (MQ=255)                            ttaattGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCt                                                                                                            >  4:484249/1‑149 (MQ=255)                                               cGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAACCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCAcc                                                                                         <  4:490540/149‑1 (MQ=255)                                                   tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCAt                                                                                       <  2:73797/147‑1 (MQ=255)                                                   tCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCAt                                                                                       >  1:73797/1‑147 (MQ=255)                                                      tGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCa                                                                                  >  1:491976/1‑149 (MQ=255)                                                       gCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCAt                                                                                 <  3:308779/149‑1 (MQ=255)                                                            gAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTtcatc                                                                                                       <  1:483212/122‑1 (MQ=255)                                                            gAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTtcatc                                                                                                       >  2:483212/1‑122 (MQ=255)                                                            gAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAg                                                                            <  4:124746/149‑1 (MQ=255)                                                            gAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAg                                                                            >  4:286217/1‑149 (MQ=255)                                                                  tCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACa                                                                      <  2:185102/149‑1 (MQ=255)                                                                     cTGGCGCTCCGATAACCGGGCCATTTCTGGTACCGGTTTTCGCTACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTTCCCGACTACGCGGGCAGCGTGTTCATCAGGCAAGCTTCACCATGATCATTCCAGCCAgcagca                                                                   >  3:174464/1‑149 (MQ=255)                                                                      tGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCaa                                                                  <  3:286217/149‑1 (MQ=255)                                                                       ggCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAg                                                                 >  2:181444/1‑149 (MQ=255)                                                                             ccGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAgg                                                           <  2:665348/149‑1 (MQ=255)                                                                              cGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGc                                                          <  2:187784/149‑1 (MQ=255)                                                                               gATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGcc                                                         >  2:526787/1‑149 (MQ=255)                                                                                     cGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTtcat                                                                                                        <  1:420945/96‑1 (MQ=255)                                                                                     cGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTtcat                                                                                                        >  2:420945/1‑96 (MQ=255)                                                                                     cGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGACAACAGCAAGACCAGGCCAATCCa                                                   <  2:99445/149‑1 (MQ=255)                                                                                      gggCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAg                                                  <  2:338298/149‑1 (MQ=255)                                                                                            tttCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTa                                            >  2:695988/1‑149 (MQ=255)                                                                                                tGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGAt                                        >  2:525151/1‑149 (MQ=255)                                                                                                      cggatatCGCGACAAGCTGGATCAACTGTCGGAAAAATAATGTTCAAACGCTGCCCGACATCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCGAGCCAACAGCAAGACCAGGCCAATCCAGCATTTACGACTTAAcc                                  >  4:449484/7‑149 (MQ=255)                                                                                                         ttttCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGtt                               <  2:107713/149‑1 (MQ=255)                                                                                                         ttttCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGtt                               <  4:18308/149‑1 (MQ=255)                                                                                                             tgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAGCGTc                                                                                                             >  3:333835‑M1/41‑67 (MQ=255)                                                                                                             tgttggctggaatgatcatggtgaaacttgcctgatgaagACGCTGCCCGACAGCGCGGGCAGCGTc                                                                                                             <  4:333835‑M1/27‑1 (MQ=255)                                                                                                              gcgACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGAc                            <  4:315253/147‑1 (MQ=255)                                                                                                              gcgACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCa                          >  3:318065/1‑149 (MQ=255)                                                                                                              gcgACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACAATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGAc                            >  3:315253/1‑147 (MQ=255)                                                                                                                       tGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATc                 <  2:519649/149‑1 (MQ=255)                                                                                                                        ggATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATcc                <  3:108713/149‑1 (MQ=255)                                                                                                                                 gTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCgg       <  4:524398/149‑1 (MQ=255)                                                                                                                                     cAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTaa   <  3:505139/149‑1 (MQ=255)                                                                                                                                      aaaaaTAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAAc  >  3:359398/1‑149 (MQ=255)                                                                                                                                               gTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTCACCGtt                               <  1:239796/111‑1 (MQ=255)                                                                                                                                               gTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTAATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTACCCGtt                               >  2:239796/1‑111 (MQ=255)                                                                                                                                                     |                                                                                                                                      ATGTTGCATACCGATGACGGCTGGCAATTAATTGGGGTGCAAAGTTCGGCTCCTGCCGCGAAAGATCGCTGGCGCGCCGATAACCGGGCCATTTCTGTTACCGGTTTTCGCGACAAGCTGGATCAACTGTCGCAAAAATAATGTTCAAACGCTGCCCGACAGCGCGGGCAGCGTCTTCATCAGGCAAGTTTCACCATGATCATTCCAGCCAACAGCAAGACCAGGCCAATCCAGCCTTTACGATTTAACCGTTGACCAAACAAGATCCAACCTGCGGCTAAC  >  NC_000913/1672641‑1672922

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.