New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 3252144NA (NA)3 (0.040) 3/252 NT NA noncoding (80/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
?NC_000913 = 3252155 NA (NA)noncoding (91/98 nt) RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site RIP234 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

Only 100 of 115 total aligned reads displayed.

GCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAA  >  NC_000913/3252000‑3252291
                                                                                                                                                |                                                                                                                                                   
gCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGc                                                                                                                                                 <  4:306251/149‑1 (MQ=255)
gCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGc                                                                                                                                                 >  4:634055/1‑149 (MQ=255)
     ggTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAgc                                                                                                                                            <  2:214971/149‑1 (MQ=255)
       ttAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAgcgc                                                                                                                                          >  2:432216/1‑149 (MQ=255)
         aaaaaaaGGCACCTTACGAGGTACCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGCTGTGGCCTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCat                                                                                                                                        <  4:381258‑M2/149‑3 (MQ=255)
           aaaaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatct                                                                                                                                      <  2:455736‑M2/149‑5 (MQ=255)
           aaaaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatct                                                                                                                                      <  1:434546‑M2/149‑5 (MQ=255)
           aaaaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatct                                                                                                                                      <  3:168465‑M2/149‑5 (MQ=255)
             aaaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCatctgg                                                                                                                                    <  4:551049‑M2/149‑7 (MQ=255)
              aaGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGc                                                                                                                                   <  4:601820/149‑1 (MQ=255)
               aGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATgcgctacgcttatctggtc                                                                                                                                  <  4:279026‑M1/149‑20 (MQ=255)
               aGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCg                                                                                                                                  <  1:332932/149‑1 (MQ=255)
                ggCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGa                                                                                                                                 >  1:354394/1‑149 (MQ=255)
                 gCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAt                                                                                                                                >  1:382351/1‑149 (MQ=255)
                   aCCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAttt                                                                                                                              >  3:465251/1‑149 (MQ=255)
                   aCCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGAttt                                                                                                                              >  2:668216/1‑149 (MQ=255)
                      ttACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTgc                                                                                                                           >  3:232301/1‑149 (MQ=255)
                          gAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCtt                                                                                                                       <  3:67585/149‑1 (MQ=255)
                             gTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtc                                                                                                                    <  3:66902/149‑1 (MQ=255)
                              tGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtca                                                                                                                   <  1:440687/149‑1 (MQ=255)
                                 ctctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtcatca                                                                                                                <  1:425838/149‑1 (MQ=255)
                                 ctctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGtcatca                                                                                                                <  3:551049/149‑1 (MQ=255)
                                  tctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg                                                                                                               >  1:194435/1‑149 (MQ=255)
                                  tctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg                                                                                                               >  1:319608/1‑149 (MQ=255)
                                  tctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAg                                                                                                               >  4:583637/1‑149 (MQ=255)
                                   ctGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGt                                                                                                              <  2:131730/149‑1 (MQ=255)
                                    tGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTc                                                                                                             <  2:699175/149‑1 (MQ=255)
                                    tGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTc                                                                                                             <  1:41935/149‑1 (MQ=255)
                                      aTAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCtt                                                                                                           >  1:367163/1‑149 (MQ=255)
                                       tAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTa                                                                                                          <  3:583637/149‑1 (MQ=255)
                                       tAATTAGCTAAGTGCATGTTGTTCATGTCGGAGGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTa                                                                                                          <  2:240731/149‑1 (MQ=255)
                                          ttAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAgcg                                                                                                       >  4:366588/1‑149 (MQ=255)
                                                   tGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCAc                                                                                              <  2:8344/149‑1 (MQ=255)
                                                    gCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACg                                                                                             >  1:13943/1‑149 (MQ=255)
                                                         ttgttCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGc                                                                                           >  3:645044/1‑146 (MQ=255)
                                                         ttgttCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGc                                                                                           <  4:645044/146‑1 (MQ=255)
                                                          tgttCATGTCGGATGTGGCATGAACGCCTGATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACtt                                                                                       <  1:428620/149‑1 (MQ=255)
                                                           gttCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACttt                                                                                      >  4:491687/1‑149 (MQ=255)
                                                               aTGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttatta                                                                                  >  4:233305/1‑149 (MQ=255)
                                                                  tCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCATAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCCCTTTATTAAtt                                                                               >  3:600545/1‑149 (MQ=255)
                                                                   cGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTc                                                                              <  2:381404/149‑1 (MQ=255)
                                                                    ggATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTcc                                                                             >  2:587978/1‑149 (MQ=255)
                                                                     gATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCt                                                                            <  1:15477/149‑1 (MQ=255)
                                                                     gATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCt                                                                            >  2:589657/1‑149 (MQ=255)
                                                                      aTGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCtt                                                                           <  4:67206/149‑1 (MQ=255)
                                                                      aTGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCtt                                                                           <  2:159502/149‑1 (MQ=255)
                                                                       tgtgGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGAATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTg                                                                          <  4:320082/149‑1 (MQ=255)
                                                                           gCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACg                                                                      >  1:328302/1‑149 (MQ=255)
                                                                             aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa                                                                    <  2:45049/149‑1 (MQ=255)
                                                                             aTGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGaa                                                                    >  2:161052/1‑149 (MQ=255)
                                                                               gAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTTCTTGAACGAata                                                                  >  1:555220/1‑149 (MQ=255)
                                                                                 aCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTttat                                                                                    >  3:633641/1‑129 (MQ=255)
                                                                                 aCGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATAtt                                                                >  1:413537/1‑149 (MQ=255)
                                                                                   gCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa                                                              >  3:640133/1‑149 (MQ=255)
                                                                                   gCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTa                                                              >  1:82623/1‑149 (MQ=255)
                                                                                      ttATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTg                                                           >  3:595603/1‑149 (MQ=255)
                                                                                         tCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCa                                                        >  2:472986/1‑149 (MQ=255)
                                                                                         tCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCa                                                        <  1:42257/149‑1 (MQ=255)
                                                                                         tCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCa                                                        <  2:82623/149‑1 (MQ=255)
                                                                                            gACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCAttt                                                     >  4:496880/1‑149 (MQ=255)
                                                                                               aTACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcat                                                  >  3:678333/1‑149 (MQ=255)
                                                                                                tACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                             >  4:400822/1‑137 (MQ=255)
                                                                                                tACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAAATCCTTGAACGAATATTTAc                                                             <  3:400822/137‑1 (MQ=255)
                                                                                                  cAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATttcattca                                               >  4:15358/1‑149 (MQ=255)
                                                                                                  cAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATACCTTGAACGAATATTTACTGCCATttcattca                                               >  3:426064/1‑149 (MQ=255)
                                                                                                   aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                             <  4:200731/134‑1 (MQ=255)
                                                                                                   aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTAc                                                             >  3:200731/1‑134 (MQ=255)
                                                                                                   aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCAc                                              <  1:260681/149‑1 (MQ=255)
                                                                                                   aaaaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCAc                                              <  2:434546/149‑1 (MQ=255)
                                                                                                     aaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                            <  4:678333/149‑1 (MQ=255)
                                                                                                     aaCATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGt                                            <  2:328302/149‑1 (MQ=255)
                                                                                                          tGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTAtt                                       <  2:391755/149‑1 (MQ=255)
                                                                                                            tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCt                                     >  3:915/1‑149 (MQ=255)
                                                                                                            tACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCt                                     >  2:660319/1‑149 (MQ=255)
                                                                                                             aCATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCtt                                    <  1:161052/149‑1 (MQ=255)
                                                                                                               aTTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTaa                                  >  1:446683/1‑149 (MQ=255)
                                                                                                                ttCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATAAATTCCTTGAAGGAATTTTTACTGCCATTTCATTCACGCCTATTTTTatt                                 >  1:41289/1‑147 (MQ=255)
                                                                                                                    aTAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgc                             >  4:445710/1‑149 (MQ=255)
                                                                                                                       gATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTtgctgc                          >  2:501171/1‑149 (MQ=255)
                                                                                                                        aTTGCATAACCCGCGCAGACCAGATgcgctacgcttatctg                                                                                                                                     >  1:382036‑M1/1‑25 (MQ=255)
                                                                                                                        aTTGCATAACCCGCGCAGACCAGATgcgctacgcttatctg                                                                                                                                     <  2:382036‑M1/41‑17 (MQ=255)
                                                                                                                             aTAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATGTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaa                    >  4:653393/1‑149 (MQ=255)
                                                                                                                               aaCCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTaaaaa                  <  2:13943/149‑1 (MQ=255)
                                                                                                                                 cccGCGCAGACAAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACa                >  3:387816/1‑149 (MQ=255)
                                                                                                                                  ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACaa               <  1:501171/149‑1 (MQ=255)
                                                                                                                                  ccGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACaa               <  1:271935/149‑1 (MQ=255)
                                                                                                                                   cgcgCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAg              <  3:15358/149‑1 (MQ=255)
                                                                                                                                      gcAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGa           <  2:304425/149‑1 (MQ=255)
                                                                                                                                       cAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGAt          <  3:148420/149‑1 (MQ=255)
                                                                                                                                       cAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGAt          <  4:232301/149‑1 (MQ=255)
                                                                                                                                          aCCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGa       <  2:129845/149‑1 (MQ=255)
                                                                                                                                           ccAGATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgccttt      <  4:551049‑M1/149‑144 (MQ=255)
                                                                                                                                            cAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaat                                                                                                                 >  1:382036‑M2/1‑16 (MQ=255)
                                                                                                                                            cAGATAAGCGTAGCGCatctggtctgcgcgggttatgcaat                                                                                                                 <  2:382036‑M2/41‑26 (MQ=255)
                                                                                                                                             aGATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgccttttt    <  1:434546‑M1/149‑146 (MQ=255)
                                                                                                                                             aGATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgccttttt    <  2:455736‑M1/149‑146 (MQ=255)
                                                                                                                                             aGATgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcatgccacatccgacatgaacaacatgcacttagctaattatcagaggcacctcgtaaggtgccttttt    <  3:168465‑M1/149‑146 (MQ=255)
                                                                                                                                               aTgcgctacgcttatctggtctgcgcgggttatgcaatctattgaatgtacaatgttttgtatgtcagataaggcgttcaggccacagccgacatgaacaacatgcacttagctaattatcagaggtacctcgtaaggtgccttttttt  <  4:381258‑M1/149‑148 (MQ=255)
                                                                                                                                               aTAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTc                                                                              >  4:32556/1‑73 (MQ=255)
                                                                                                                                               aTAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCaaa  >  4:668674/1‑149 (MQ=255)
                                                                                                                                                |                                                                                                                                                   
GCTTCGGTTAAAAAAAGGCACCTTACGAGGTGCCTCTGATAATTAGCTAAGTGCATGTTGTTCATGTCGGATGTGGCATGAACGCCTTATCTGACATACAAAACATTGTACATTCAATAGATTGCATAACCCGCGCAGACCAGATAAGCGTAGCGCATCTGGCGATTTTGCGCTTGTCATCAGTCTTAGCGCGCCTTCACGGCACTTTATTAATTCCTTGAACGAATATTTACTGCCATTTCATTCACGTCTATTCTTAATTTGCTGCTTTAAAAACAAGTGATTGAGCAAA  >  NC_000913/3252000‑3252291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.