New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 1229419	77 (0.880)	4 (0.050)	4/240	NT	5.1%	intergenic (+143/+64)	ycgN/hlyE	UPF0153 family cysteine cluster protein/hemolysin E
	?	NC_000913	= 1229428	77 (0.930)					intergenic (+152/+55)	ycgN/hlyE	UPF0153 family cysteine cluster protein/hemolysin E

GGGCGCAGTGATAAATTTAATAGATGCTGATGGGGGCTTTCTTAATATACGTCTGGATGCTCGCCATTTCGTAGCCCTGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1229266‑1229419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaaaaaCACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCATTATGACAGAGCGCTTTCAAAAACAGGGCTACGAAATGGCGAGCATCCAGACGTATATTAAGAAAGCCCCCATCAGCATCTATTA  <  NC_000913/1229428‑1229283                                                                                                                                                                                                                                                                                                              GGGCGCAGTGATAAATTTAATAGATGCTGATGGGGGCTTTCTTAATATACGTCTGGATGCTCGCCATTTCGTAGCCCTGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTT                                                                                                                                                         <  2:296265/149‑1  GGCGCAGTGATAAATTTAATAGATGCTGATGGGGGCTTTCTTAATATACGTCTGGATGCTCGCCATTTCGTAGCCCTGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTA                                                                                                                                                        >  3:368767/1‑149   GCGCAGTGATAAATTTAATAGATGCTGATGGGGGCTTTCTTAATATACGTCTGGATGCTCGCCATTTCGTAGCCCTGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAA                                                                                                                                                       >  1:551493/1‑149                                                                              TGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAAAAACACAGACGTTTTTTAAAGATTGAGA                                                                                                                           <  3:159737/102‑1                                                                              TGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAAAAACACAGACGTTTTTTAAAGATTGAGA                                                                                                                           >  4:159737/1‑102                                                                                                            GTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAAAAACACAGACGTTTTTTAAAGAT                                                                                                                                <  1:84578/67‑1                                                                                                            GTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAAAAACACAGACGTTTTTTAAAGAT                                                                                                                                >  2:84578/1‑67                                                                                                                                                   TTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCATTATGACAGA                                                                             <  3:410412/79‑1                                                                                                                                                   TTTAAAAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCATTATGACAGA                                                                             >  4:410412/1‑79                                                                                                                                                        AAACACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCATTATGACAGAGCGCTTTCAGAAACAGGGCTACGAAATGGCGAGCATCCAGACGTATATTAAGAAAGCCCCCATCAGCATCTATTA  >  1:234373/1‑149                                                                                                                                                                                                                                                                                                              GGGCGCAGTGATAAATTTAATAGATGCTGATGGGGGCTTTCTTAATATACGTCTGGATGCTCGCCATTTCGTAGCCCTGTTTTTGAAAGCGCTCTGTCATAATGAGAGTTACCCGATACCTTATTATCAACAGGTAACTCTCAATCTTTAAAAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/1229266‑1229419 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttaaaaaCACAGACGTTTTTTAAAGATTGAGAGTTACCTGTTGATAATAAGGTATCGGGTAACTCTCATTATGACAGAGCGCTTTCAAAAACAGGGCTACGAAATGGCGAGCATCCAGACGTATATTAAGAAAGCCCCCATCAGCATCTATTA  <  NC_000913/1229428‑1229283

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.