| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 3776009 | 175 (1.990) | 8 (0.100) | 9/238 | NT | 4.4% | coding (438/588 nt) | mtlR | mannitol operon repressor |
| ? | NC_000913 | = 3776016 | 188 (2.300) | coding (445/588 nt) | mtlR | mannitol operon repressor | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
ACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3775853‑3776009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcggcgGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAATGACGC < NC_000913/3776016‑3775870 ACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCG > 1:617600/1‑149ACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCG > 2:218883/1‑149 CTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGT < 3:15318/149‑1 TCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTG > 1:279394/1‑149 TCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTG > 3:386186/1‑149 TCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCATTGGACCCTTTGGTGAACTGCCCTGCGTG > 2:63338/1‑149 ATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGC > 4:27380/1‑149 ATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGC > 4:511550/1‑149 TTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGG < 2:398796/149‑1 TACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGC < 2:140840/149‑1 TACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGAAGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGC < 3:522042/149‑1 GTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCC > 2:221151/1‑149 CATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCCGC < 1:221151/149‑1 CATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTCCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCG > 3:371320/1‑128 CATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGAAGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGTACCCTTTGGTGAACTGCACTGCG < 4:371320/128‑1 ATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCCGCC < 1:517211/149‑1 CCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGTGTGGCGGCGGTGGTAACGCCGCCACGCA < 4:265567/146‑1 GAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCCGCCA > 3:298545/1‑57 GAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCCGCCA < 4:298545/57‑1 ATCCTTTGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCCGCCAC < 4:588346/55‑1 ATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCGGTGGTAACGCCGCCAC > 3:588346/1‑55 TGCGTGGCGGCGTTACCACCGCCGCCACACAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGG < 3:265567/146‑1 GGCGGCGGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAAT < 4:121402/149‑1 GGCGGCGGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAAT < 3:368944/149‑1 GGCGGCGGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAAT < 2:733376/149‑1 GCGGCGGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAATG < 4:721965/149‑1 CGGCGGTGGTAACGCCGCCACGCAGTGCAGTTCACCAACGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGACGGTTAATGA < 2:676938/149‑1 GGCGGTGGTAACGCCGCCACGTAGTGCAGTTCACCAAAGGGTCTAAGGATTTCGTCGTCGGTAAAGGCGTACTTGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGATAATGAC < 1:317281/149‑1 CGGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAATGACGC < 3:520709/149‑1 ACTCATTTACGGGTTGGGCGTCATTAACCGCCAGGAATACGAAGATGCGGAACTGCTGATGGCATTGCGTGAAGAGCTAAATCACGACGGCAACGAGTACGCCTTTACCGACGACGAAATCCTTGGACCCTTTGGTGAACTGCACTGCGTGGCGGCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/3775853‑3776009‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gtggcggcgGTGGTAACGCCGCCACGCAGTGCAGTTCACCAAAGGGTCCAAGGATTTCGTCGTCGGTAAAGGCGTACTCGTTGCCGTCGTGATTTAGCTCTTCACGCAATGCCATCAGCAGTTCCGCATCTTCGTATTCCTGGCGGTTAATGACGC < NC_000913/3776016‑3775870 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |