New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3767549 =295 (3.350)4 (0.050) 4/244 NT 1.3% pseudogene (329/945 nt) rhsJ Rhs‑family protein
?NC_000913 3767585 = 319 (3.800)pseudogene (365/945 nt) rhsJ Rhs‑family protein
Rejected: Frequency below/above cutoff threshold.

Only 100 of 351 total aligned reads displayed.

GCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC  >  NC_000913/3767401‑3767696
                                                                                                                                                    |                                                                                                                                                     
atctcatcagctacagaatggataagatcactttcggggtataaatttatatcaaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatata                                                                                                                                                       <  3:801804‑M1/1‑1 (MQ=255)
atctcatcagctacagaatggataagatcactttcggggtataaatttatatcaaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatata                                                                                                                                                       <  1:753500‑M1/1‑1 (MQ=255)
  gcTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAcc                                                                                                                                                     >  2:639791/1‑149 (MQ=255)
  gcTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAcc                                                                                                                                                     >  2:751682/1‑149 (MQ=255)
   tcatcagctacagaatggataagatcactttcggggtataaatttatatcaaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatatACCg                                                                                                                                                    <  1:336785‑M1/4‑1 (MQ=255)
    tcatcaGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGc                                                                                                                                                   >  4:507108/1‑149 (MQ=255)
    catcagctacagaatggataagatcactttcggggtataaatttatatcaaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatatACCGc                                                                                                                                                   >  1:147893‑M1/145‑149 (MQ=255)
    catcagctacagaatggataagatcactttcggggtataaatttatatcaaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatatACCGc                                                                                                                                                   <  3:710528‑M1/5‑1 (MQ=255)
              ggAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCtatt                                                                                                                                       >  1:558520/1‑149 (MQ=255)
              ggAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCtatt                                                                                                                                       >  2:266528/1‑149 (MQ=255)
                aaGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAAACGCC‑‑ACCGCtattat                                                                                                                                     <  3:633525/149‑1 (MQ=255)
                    ggCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGAcc                                                                                                                                 <  4:746419/149‑1 (MQ=255)
                          aGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCgctgc                                                                                                                           <  4:210627/149‑1 (MQ=255)
                          aGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCgctgc                                                                                                                           >  3:409360/1‑149 (MQ=255)
                                 tgCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCgctgc                                                                                                                           <  4:62230/142‑1 (MQ=255)
                                  cggggtataaatttatatcaaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatatACCGCCCCACCGCTATTATGACCCGCGGCTGGGGc                                                                                                                     >  3:738285‑M1/115‑149 (MQ=255)
                                    gcAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGta                                                                                                                 <  4:695299/149‑1 (MQ=255)
                                    gcAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGta                                                                                                                 >  2:36004/1‑149 (MQ=255)
                                    gcAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGta                                                                                                                 <  3:49043/149‑1 (MQ=255)
                                      aGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGtata                                                                                                               <  2:419075/149‑1 (MQ=255)
                                       gAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCtatta                                                                                                                                      >  2:604049/1‑125 (MQ=255)
                                       gAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTatat                                                                                                              <  2:43299/149‑1 (MQ=255)
                                             gatgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCa                                                                                                        >  1:295222/1‑149 (MQ=255)
                                             gatgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCa                                                                                                        >  1:710409/1‑149 (MQ=255)
                                              atgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGta                                                                                                                 >  4:232518/1‑139 (MQ=255)
                                              atgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGta                                                                                                                 <  3:232518/139‑1 (MQ=255)
                                               tgaATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAgg                                                                                                      >  1:211373/1‑149 (MQ=255)
                                                     gggCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCAc                                                                                                           <  1:53758/138‑1 (MQ=255)
                                                     gggCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGa                                                                                                >  4:360319/1‑149 (MQ=255)
                                                     gggCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGa                                                                                                <  1:505080/149‑1 (MQ=255)
                                                     aaccaaaccttgcggatctacatttatgaccggattcaacggatactgataaaaattccatccccccttcagtccaatcggatcctgagtgatatACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGta                                                                                                                 >  2:222340‑M1/96‑132 (MQ=255)
                                                       gCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGAtt                                                                                              <  4:471205/149‑1 (MQ=255)
                                                               ctgAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGaa                                                                                      <  3:450951/149‑1 (MQ=255)
                                                                 gAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAgg                                                                                    >  4:735943/1‑149 (MQ=255)
                                                                    tgatgaGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAggggg                                                                                 >  1:432508/1‑149 (MQ=255)
                                                                      atgaGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCtat                                                                                                                                        >  4:559320/1‑92 (MQ=255)
                                                                      atgaGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGa                                                                                                     <  1:226989/127‑1 (MQ=255)
                                                                        gagaACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATg                                                                             <  3:508661/149‑1 (MQ=255)
                                                                        gagaACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATg                                                                             >  3:192446/1‑149 (MQ=255)
                                                                        gagaACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATg                                                                             >  1:364206/1‑149 (MQ=255)
                                                                        gagaACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATg                                                                             <  2:800393/149‑1 (MQ=255)
                                                                        gagaACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATg                                                                             >  2:783573/1‑149 (MQ=255)
                                                                          gaACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGAt                                                                              <  3:675368/146‑1 (MQ=255)
                                                                           aaCCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGaa                                                                          <  1:639791/149‑1 (MQ=255)
                                                                              ccGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCa                                                                                                        <  3:258677/116‑1 (MQ=255)
                                                                              ccGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAttt                                                                       >  2:546445/1‑149 (MQ=255)
                                                                              ccGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAttt                                                                       >  2:513338/1‑149 (MQ=255)
                                                                              ccGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAttt                                                                       >  2:495271/1‑149 (MQ=255)
                                                                              ccGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAttt                                                                       >  3:327166/1‑149 (MQ=255)
                                                                              ccGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAttt                                                                       >  2:114810/1‑149 (MQ=255)
                                                                                gCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAttttt                                                                     <  4:305347/149‑1 (MQ=255)
                                                                                gCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAAt                                                                         >  1:798690/1‑145 (MQ=255)
                                                                                  atcatcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTTAAGGGGGGATGGAATTTTTAt                                                                   <  2:45913/149‑1 (MQ=255)
                                                                                  atcatcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTAt                                                                   <  3:100503/149‑1 (MQ=255)
                                                                                  atcatcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTAt                                                                   <  2:295222/149‑1 (MQ=255)
                                                                                     atcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTAt                                                                   >  3:776371/1‑146 (MQ=255)
                                                                                     atcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTAt                                                                   <  4:776371/146‑1 (MQ=255)
                                                                                      tcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGt                                                               <  1:777514/149‑1 (MQ=255)
                                                                                      tcTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGAGCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGt                                                               >  3:520121/1‑149 (MQ=255)
                                                                                         gcagcaGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATc                                                            >  2:13260/1‑149 (MQ=255)
                                                                                                cTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGaa                                                     >  4:512247/1‑149 (MQ=255)
                                                                                                 tCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAAt                                                    >  4:171469/1‑149 (MQ=255)
                                                                                                 tCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAAt                                                    >  3:757866/1‑149 (MQ=40)
                                                                                                   aTTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATcc                                                  >  2:376878/1‑149 (MQ=40)
                                                                                                   aTTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATcc                                                  >  2:336785/1‑149 (MQ=40)
                                                                                                   aTTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATcc                                                  >  2:199866/1‑149 (MQ=39)
                                                                                                   aTTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATcc                                                  >  1:164747/1‑149 (MQ=40)
                                                                                                    ttCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCg                                                 >  4:124912/1‑149 (MQ=255)
                                                                                                    ttCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCg                                                 >  3:1176/1‑149 (MQ=39)
                                                                                                     tCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCgg                                                <  2:705994/149‑1 (MQ=40)
                                                                                                       gCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              >  2:537491/1‑149 (MQ=40)
                                                                                                       gCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              <  4:146709/149‑1 (MQ=40)
                                                                                                        ccTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCa                                             >  3:627190/1‑149 (MQ=255)
                                                                                                         cTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑Acc                                                                                                                                             <  3:283257/52‑1 (MQ=38)
                                                                                                         cTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCAt                                            <  1:246049/149‑1 (MQ=255)
                                                                                                                 tCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAg                                    >  1:128332/1‑149 (MQ=255)
                                                                                                                   agcagTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGAt                                  >  3:14709/1‑149 (MQ=255)
                                                                                                                          tgatgaGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           >  3:371449/1‑149 (MQ=255)
                                                                                                                          tgatgaGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAg                           <  4:409360/149‑1 (MQ=255)
                                                                                                                           gatgaGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          >  3:21529/1‑149 (MQ=255)
                                                                                                                            atgaGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGt                         >  3:164328/1‑149 (MQ=255)
                                                                                                                             tgaGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGtt                        >  4:386759/1‑149 (MQ=255)
                                                                                                                               aggagTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTg                      <  1:547666/149‑1 (MQ=255)
                                                                                                                                ggagTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTgg                     <  4:454040/149‑1 (MQ=255)
                                                                                                                                   gTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGt                                      <  4:264455/129‑1 (MQ=255)
                                                                                                                                    tCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATc                                 >  3:546171/1‑133 (MQ=255)
                                                                                                                                      cGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               <  1:457128/149‑1 (MQ=255)
                                                                                                                                      cGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGata               >  2:179992/1‑149 (MQ=255)
                                                                                                                                         ccTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATaa            >  1:111151/1‑149 (MQ=255)
                                                                                                                                           tGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAgggggg                                                                                <  3:56940/79‑1 (MQ=39)
                                                                                                                                           tGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAgggggg                                                                                >  4:56940/1‑79 (MQ=40)
                                                                                                                                           tGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAAt          >  2:229353/1‑149 (MQ=255)
                                                                                                                                           tGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCAATCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATaaag          <  4:757866/149‑2 (MQ=255)
                                                                                                                                               ttACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTc                                              <  1:609614/109‑1 (MQ=255)
                                                                                                                                               ttACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTtat      >  1:66947/1‑149 (MQ=255)
                                                                                                                                                   aaCCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTGAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAgg                          >  3:459186/1‑125 (MQ=255)
                                                                                                                                                   aaCCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGa                 >  4:591091/1‑134 (MQ=255)
                                                                                                                                                   aaCCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGa                 <  1:86514/134‑1 (MQ=255)
                                                                                                                                                   aaCCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGa                 >  2:86514/1‑134 (MQ=255)
                                                                                                                                                   aaCCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGa                 <  3:591091/134‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GCGCTCATCAGCACGGAAGGGGCAACAGCGTGGTGCGCAGAATATGATGAATGGGGCAACCTGCTGAGTGATGAGAACCCGCATCATCTGCAGCAGCTCATTCGCCTGCCGGGTCAGCAGTATGATGAGGAGTCCGGCCTGTATTACAACCGCC‑‑ACCGCTATTATGACCCGCTGCTGGGGCGGTATATCACTCAGGATCCGATTGGACTGAAGGGGGGATGGAATTTTTATCAGTATCCGTTGAATCCGGTCATAAATGTAGATCCGCAAGGTTTGGTTGATATAAATTTATACCC  >  NC_000913/3767401‑3767696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.