New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4008067	63 (0.720)	3 (0.040)	3/242	NT	4.7%	coding (311/621 nt)	rhtC	threonine efflux pump
	?	NC_000913	= 4008090	62 (0.750)					coding (334/621 nt)	rhtC	threonine efflux pump
Rejected: Frequency below/above cutoff threshold.

TGCGCTGCTTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTT  >  NC_000913/4007921‑4008215                                                                                                                                                   |                                                                                                                                                     tGCGCTGCTTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCcac                                                                                                                                                    <  4:699382/149‑1 (MQ=255) tGCGCTGCTTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCcac                                                                                                                                                    <  2:614640/149‑1 (MQ=255) tGCGCTGCTTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCcac                                                                                                                                                    <  2:775295/149‑1 (MQ=255)     ctgctTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGt                                                                                                                                                <  4:649402/149‑1 (MQ=255)        ctTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGa                                                                                                                                             <  3:302243/149‑1 (MQ=255)          tGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGc                                                                                                                                           <  2:387402/149‑1 (MQ=255)             ccTGCATTTGATTATCGAAAAAATGGCCTGGCCGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTgg                                                                                                                                        >  4:271079/1‑149 (MQ=255)              cTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGc                                                                                                                                           <  1:739474/145‑1 (MQ=255)              cTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGGTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGc                                                                                                                                           >  2:739474/1‑145 (MQ=255)                 cATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGaa                                                                                                                                    >  2:326140/1‑149 (MQ=255)                 cATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGaa                                                                                                                                    <  1:637698/149‑1 (MQ=255)                  aTTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGc                                                                                                                                           >  3:467687/1‑141 (MQ=255)                  aTTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGc                                                                                                                                           <  4:467687/141‑1 (MQ=255)                      gATTATCGAAATATTGGCCTGGCTGCATACGCAGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTAACAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTg                                                                                                                               >  4:344615/1‑149 (MQ=255)                       aTTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGg                                                                                                                              >  1:199812‑M2/1‑148 (MQ=255)                       aTTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGg                                                                                                                              >  2:80119‑M2/1‑148 (MQ=255)                           tCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGggcgc                                                                                                                          <  2:380504‑M2/149‑6 (MQ=255)                           tCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGggcgc                                                                                                                          <  2:90785‑M2/149‑6 (MQ=255)                             gAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCcacttttcgccagctcgacctgtggcgcag                                                                                                                        <  2:96392‑M1/149‑31 (MQ=255)                                aaaaTGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGttt                                                                                                                     <  2:785213/149‑1 (MQ=255)                                 aaaTGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTc                                                                                                                    >  3:117619/1‑149 (MQ=255)                                  aaTGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCcacttttcgccagctcgacctgtggcgcagg                                                                                                                       >  4:302676‑M1/1‑114 (MQ=255)                                  aaTGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCcacttttcgccagctcgacctgtggcgcagg                                                                                                                       <  3:302676‑M1/145‑32 (MQ=255)                                  aaTGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTcc                                                                                                                   <  1:685470/149‑1 (MQ=255)                                  aaTGGCCTGGCTGCATACGCTGATTAAGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTcc                                                                                                                   <  4:457925/149‑1 (MQ=255)                                   aTGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCt                                                                                                                  <  3:217227/149‑1 (MQ=255)                                       ccTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGaaa                                                                                                              <  1:301842/149‑1 (MQ=255)                                              gCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTAc                                                                                                       >  4:528661/1‑149 (MQ=255)                                               catgggctgctTTTGGTGGGCGGTTGACTTTATCGTATATGGATGTGTTCCCAGATGATACGTCGTCCACTGAAAAAAGAGGTGGTTTCTGCATCTGCGCAACAGCTCGAGCTGGCGAAAAGTGGGCGCAGTTTAATGAAAGGTTTaaa                                                                                                      <  1:800173/144‑3 (MQ=255)                                                 tACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGa                                                                                                    <  3:271079/149‑1 (MQ=255)                                                    gCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCa                                                                                                 >  3:285885/1‑149 (MQ=255)                                                           aTGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGc                                                                                          <  1:215418/149‑1 (MQ=255)                                                            tggtggGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCg                                                                                           >  2:40580/1‑147 (MQ=255)                                                            tggtggGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCg                                                                                           <  1:40580/147‑1 (MQ=255)                                                                 ggCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATcc                                                                                    <  4:470084/149‑1 (MQ=255)                                                                           tGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGAtt                                                                          >  3:62374/1‑149 (MQ=255)                                                                           tGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGAtt                                                                          <  2:212895/149‑1 (MQ=255)                                                                            gTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTa                                                                         >  2:501711/1‑149 (MQ=255)                                                                              aTCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATc                                                                       <  1:501711/149‑1 (MQ=255)                                                                                 tctGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGa                                                                            <  1:212536/141‑1 (MQ=255)                                                                                 tctGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGa                                                                            >  2:212536/1‑141 (MQ=255)                                                                                 tctGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTAc                                                                    >  2:273689/1‑149 (MQ=255)                                                                                   tgctgGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGAtt                                                                          <  4:671595/141‑1 (MQ=255)                                                                                   tgctgGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGAtt                                                                          >  3:671595/1‑141 (MQ=255)                                                                                   tgctgGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACtt                                                                  >  3:548600/1‑149 (MQ=255)                                                                                     ctgGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTg                                                                <  1:380504/149‑1 (MQ=255)                                                                                       ggATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGc                                                              >  1:408537/1‑149 (MQ=255)                                                                                           gggTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCgg                                                          >  2:444088/1‑149 (MQ=255)                                                                                            ggTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCATAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATc                                                                                     >  2:663585/1‑121 (MQ=255)                                                                                            ggTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATc                                                                                     <  1:663585/121‑1 (MQ=255)                                                                                              ttACCAGATGCTACGTGGTGCACTGAAAAGAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGgtgt                                                       >  3:653053/1‑149 (MQ=255)                                                                                              ttACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGgtgt                                                       >  1:581118/1‑149 (MQ=255)                                                                                                aCCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTtc                                                     <  2:270533/149‑1 (MQ=255)                                                                                                 ccAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTtc                                                     >  4:209468/1‑148 (MQ=255)                                                                                                 ccAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTtc                                                     <  3:209468/148‑1 (MQ=255)                                                                                                    gATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAt                                                 >  4:470635/1‑149 (MQ=255)                                                                                                    gATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAt                                                 <  2:576100/149‑1 (MQ=255)                                                                                                       gCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAttgt                                              <  1:704396/149‑1 (MQ=255)                                                                                                         tACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAttgttt                                            <  1:326140/149‑1 (MQ=255)                                                                                                         tACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAttgttt                                            <  3:344615/149‑1 (MQ=255)                                                                                                          aCGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAttgtttg                                           >  3:213064/1‑149 (MQ=255)                                                                                                           cGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCAttgtttgt                                          <  2:408537/149‑1 (MQ=255)                                                                                                                 gCACTGAAAAAAGAGGAGGTTTCTGCACCTGCGCCACAGGTCGAGCAGGCGAAAACTGGGCGCACTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCCAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGa                                    <  4:653053/149‑1 (MQ=255)                                                                                                                  cACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGAt                                   <  1:202266/149‑1 (MQ=255)                                                                                                                    cTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATaa                                 <  3:470635/149‑1 (MQ=255)                                                                                                                     tGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATc                                                                                     >  1:121432/1‑96 (MQ=255)                                                                                                                     tGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATc                                                                                     <  2:121432/96‑1 (MQ=255)                                                                                                                        aaaaaGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACt                                                                                                      <  3:513215/76‑1 (MQ=255)                                                                                                                        aaaaaGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACt                                                                                                      >  4:513215/1‑76 (MQ=255)                                                                                                                         aaaaGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTg                            >  4:665162/1‑149 (MQ=255)                                                                                                                                     ttCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACcgcgc                <  4:117619/149‑1 (MQ=255)                                                                                                                                       cTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCgcgcgc              <  4:342631/149‑1 (MQ=255)                                                                                                                                         gCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTg            >  2:799029/1‑149 (MQ=255)                                                                                                                                            ccTGCGCCACAGGTCGAGCTGGCGAAAAGTGggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccatt             <  3:302676‑M2/145‑115 (MQ=255)                                                                                                                                            ccTGCGCCACAGGTCGAGCTGGCGAAAAGTGggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccatt             >  4:302676‑M2/1‑31 (MQ=255)                                                                                                                                             cTGCGCCACAGGTCGAGCTGGCGAAAAGTGggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccattttttc        <  2:96392‑M2/149‑120 (MQ=255)                                                                                                                                               gcgcCcacttttcgccagctcgacctgtggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccattttttcga      <  2:90785‑M1/149‑145 (MQ=255)                                                                                                                                               gcgcCcacttttcgccagctcgacctgtggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccattttttcga      <  2:380504‑M1/149‑145 (MQ=255)                                                                                                                                                  ccACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCAtttt   <  2:323471/149‑1 (MQ=255)                                                                                                                                                   ccacttttcgccagctcgacctgtggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccattttttcgataat  >  2:80119‑M1/1‑1 (MQ=255)                                                                                                                                                   ccacttttcgccagctcgacctgtggcgcaggtgcagaaaccgcctcttttttcagtgcaccacgtagcatctggtaacccatccagcagagatacaggccaccgcccaccataatcagcgtatgcagccaggccattttttcgataat  >  1:199812‑M1/1‑1 (MQ=255)                                                                                                                                                   cacaGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCAttttt  >  1:445253/1‑149 (MQ=255)                                                                                                                                                   cacaGGTCGAGATGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCAttttt  <  3:519597/149‑1 (MQ=255)                                                                                                                                                   |                                                                                                                                                     TGCGCTGCTTGGCCTGCATTTGATTATCGAAAAAATGGCCTGGCTGCATACGCTGATTATGGTGGGCGGTGGCCTGTATCTCTGCTGGATGGGTTACCAGATGCTACGTGGTGCACTGAAAAAAGAGGCGGTTTCTGCACCTGCGCCACAGGTCGAGCTGGCGAAAAGTGGGCGCAGTTTCCTGAAAGGTTTACTGACCAATCTCGCTAATCCGAAAGCGATTATCTACTTTGGCTCGGTGTTCTCATTGTTTGTCGGTGATAACGTTGGCACTACCGCGCGCTGGGGCATTTTT  >  NC_000913/4007921‑4008215

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.