mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,296,268 | 0 | T | C | 20.0% | 86.9 / 16.6 | 49 | intergenic (+474/+168) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| Marginal new junction evidence (lowest skew 10 of 25 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 30 (0.270) | 29/510 | 3.3 | 100% | intergenic (+253/‑1684) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+1453/‑484) | ychE/oppA | UPF0056 family inner membrane protein/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | = 1207805 | 87 (0.770) | 29 (0.270) | 24/486 | 3.9 | 25.5% | coding (305/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | = 1209602 | 88 (0.830) | pseudogene (18/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | = 1978502 | 0 (0.000) | 21 (0.190) | 20/502 | 4.9 | 100% | intergenic (‑305/+16) | flhD/insB1 | flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B |
| ? | NC_000913 | 1979279 = | 0 (0.000) | intergenic (‑64/‑474) | insA/uspC | IS1 repressor TnpA/universal stress protein | |||||
| * | ? | NC_000913 | 1207790 = | 91 (0.810) | 16 (0.150) | 15/486 | 6.0 | 15.3% | coding (290/630 nt) | stfP | e14 prophage; uncharacterized protein |
| ? | NC_000913 | 1209619 = | 92 (0.870) | pseudogene (1/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 673559 = | 124 (1.100) | 5 (0.050) | 5/504 | 10.5 | 4.2% | coding (1225/2583 nt) | leuS | leucyl‑tRNA synthetase |
| ? | NC_000913 | 673597 = | 106 (0.970) | coding (1187/2583 nt) | leuS | leucyl‑tRNA synthetase | |||||
| * | ? | NC_000913 | = 1209618 | 101 (0.900) | 26 (0.250) | 4/488 | 10.9 | 18.8% | pseudogene (2/501 nt) | stfE | pseudogene, e14 prophage; side tail fiber protein fragment family;Phage or Prophage Related |
| ? | NC_000913 | 2471897 = | 129 (1.220) | pseudogene (226/579 nt) | yfdL | pseudogene, CPS‑53 (KpLE1) prophage;Phage or Prophage Related | |||||
| * | ? | NC_000913 | 4037216 = | 64 (0.570) | 4 (0.040) | 4/500 | 11.1 | 6.3% | noncoding (76/77 nt) | ileT | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 57 (0.520) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 3427077 | 15 (0.130) | 4 (0.040) | 4/500 | 11.1 | 10.1% | noncoding (76/77 nt) | ileU | tRNA‑Ile |
| ? | NC_000913 | 4037237 = | 57 (0.520) | intergenic (+20/‑23) | ileT/alaT | tRNA‑Ile/tRNA‑Ala | |||||
| * | ? | NC_000913 | = 781512 | 114 (1.010) | 3 (0.030) | 3/484 | 11.5 | 2.6% | intergenic (+68/‑65) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | NC_000913 | 781780 = | 115 (1.090) | intergenic (+128/‑305) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | NC_000913 | = 4495924 | 95 (0.870) | 7 (0.060) +GCTAC |
3/494 | 11.7 | 6.8% | coding (286/1020 nt) | ahr | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing |
| ? | NC_000913 | 4495925 = | 98 (0.870) | coding (285/1020 nt) | ahr | broad specificity NADPH‑dependent aldehyde reductase, Zn‑containing | |||||