New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3739534 =	220 (3.330)	6 (0.100)	4/250	NT	2.9%	intergenic (+7/‑171)	malS/avtA	alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
	?	NC_000913	3739567 =	195 (3.190)					intergenic (+40/‑138)	malS/avtA	alpha‑amylase/valine‑pyruvate aminotransferase; transaminase C; alanine‑valine transaminase
Rejected: Frequency below/above cutoff threshold.

TCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3739691‑3739534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggaagccgCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCT  >  NC_000913/3739567‑3739714                                                                                                                                                                                                                                                                                                                    TCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAAC                                                                                                                                                               >  1:351104/1‑149  CGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACG                                                                                                                                                              <  1:197104/149‑1  CGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACG                                                                                                                                                              <  1:346056/149‑1   GAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGG                                                                                                                                                             <  2:351104/149‑1   GAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGG                                                                                                                                                             <  1:65278/149‑1   GAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGG                                                                                                                                                             <  1:497449/149‑1     ACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGA                                                                                                                                                           >  3:113936/1‑149      CTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAA                                                                                                                                                          <  1:144325/149‑1      CTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAA                                                                                                                                                          <  3:178224/149‑1      CTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAA                                                                                                                                                          >  1:115522/1‑149       TCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAG                                                                                                                                                         >  3:84924/1‑149       TCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAG                                                                                                                                                         >  3:311790/1‑149       TCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAG                                                                                                                                                         >  1:178367/1‑149        CTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAGC                                                                                                                                                        <  3:439101/149‑1         TGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAGCC                                                                                                                                                       <  1:222686/149‑1         TGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCCGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAGCC                                                                                                                                                       >  3:418615/1‑149          GTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAGCCG                                                                                                                                                      <  3:322431/149‑1                                                GTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAAC                                                                                                                                                               <  4:343374/102‑1                                                GTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAAC                                                                                                                                                               >  3:343374/1‑102                                                                                                                              CGGCTTCCCGAGGTACTGACGAACGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTAT                                                    <  1:528412/131‑1                                                                                                                              CGGCTTCCCGAGGTACTGACGAACGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTAT                                                    >  2:528412/1‑131                                                                                                                                    CCCGAGGTACTGACGAACGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAG                                                                                                                       >  4:186150/1‑58                                                                                                                                    CCCGAGGTACTGACGAACGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAG                                                                                                                       <  3:482500/58‑1                                                                                                                                    CCCGAGGTACTGACGAACGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAG                                                                                                                       <  3:186150/58‑1                                                                                                                                    CCCGAGGTACTGACGAACGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAG                                                                                                                       >  4:482500/1‑58                                                                                                                                                     CGGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTA           >  1:339824/1‑149                                                                                                                                                      GGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTAT          >  2:467776/1‑149                                                                                                                                                      GGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTAT          <  2:212683/149‑1                                                                                                                                                      GGGAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTAT          >  2:167090/1‑149                                                                                                                                                        tAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGA        <  1:516867/148‑1                                                                                                                                                        GAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGA        <  3:19261/149‑1                                                                                                                                                        GAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGA        <  2:222686/149‑1                                                                                                                                                        GAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGA        <  1:535277/149‑1                                                                                                                                                        GAAGCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGA        >  4:44096/1‑149                                                                                                                                                           GCCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACAT     >  1:214405/1‑149                                                                                                                                                            CCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATT    >  2:505425/1‑149                                                                                                                                                            CCGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATT    <  2:178381/149‑1                                                                                                                                                             CGCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTACCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTC   >  2:551709/1‑149                                                                                                                                                              GCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCT  >  3:385447/1‑149                                                                                                                                                              GCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCT  >  1:361277/1‑149                                                                                                                                                              GCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCT  >  4:246582/1‑149                                                                                                                                                                                                                                                                                                                    TCGAACTCTGTAGCAAGGAAGGTAACAATAACGCTACATTTGCTGGGGTGCAAATCGGTCTGTTGAAGAGTGAGCGGTGCTTTATCCTGCAACGCTGATTAGGGCTGACATTTTATCCTGGTTGGCGGCTTCCCGAGGTACTGACGAACGGGAAGCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/3739691‑3739534 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgggaagccgCCAACCAGGATAAAATGTCAGCCCTAATCAGCGTTGCAGGATAAAGCACCGCTCACTCTTCAACAGACCGATTTGCACCCCAGCAAATGTAGCGTTATTGTTACCTTCCTTGCTACAGAGTTCGACAGATATCCCGCTATGACATTCT  >  NC_000913/3739567‑3739714

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.