New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	726472 =	39 (0.590)	3 (0.050)	3/260	NT	6.7%	coding (565/2049 nt)	kdpB	potassium translocating ATPase, subunit B
	?	NC_000913	726511 =	46 (0.720)					coding (526/2049 nt)	kdpB	potassium translocating ATPase, subunit B

TGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGATA  >  NC_000913/726325‑726620                                                                                                                                                    |                                                                                                                                                     tGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATc                                                                                                                                                     >  1:119552/1‑149 (MQ=255)  taaaggcgatatcgtactggtagaagctggcgatgttaacccctgcgatggtgatgttagtgaagggggtgcatcggtcgatgaaagcgccatcaccggggaatcgacaccggtgatccgtgaatccggcggcgattttgcctccgTCa                                                                                                                                                    <  2:539034‑M1/3‑1 (MQ=255)   aaaggcgatatcgtactggtagaagctggcgatattatcccctgcgatggtgaagttattgaagggggtgcatcggtcgatgaaagcgccatcaccggggaatcggcaccggtgatccgtgaatccggcggcgattttgcctccgTCAc                                                                                                                                                   <  4:206347‑M1/4‑1 (MQ=255)    cGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCAcc                                                                                                                                                  <  4:48584/149‑1 (MQ=255)             gTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCa                                                                                                                                         >  3:206347/1‑149 (MQ=255)              tAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCag                                                                                                                                        >  2:347535/1‑149 (MQ=255)                       gATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATAc                                                                                                                               >  2:385680/1‑149 (MQ=255)                                ggCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTgccgc                                                                                                                      >  1:571467/1‑149 (MQ=255)                                cgatattatcccctgcgatggtgaagttattgaagggggtgcatcggtcgatgaaagcgccatcaccggggaatcggcaccggtgatccgtgaatccggcggcgattttgcctccgTCACCAGCCAGTCAGAAAGAATACGCGTgccgc                                                                                                                      <  4:227540‑M1/33‑1 (MQ=255)                                     ttatcccctgcgatggtgaagttattgaagggggtgcatcggtcgatgaaagcgccatcaccggggaatcggcaccggtgatccgtgaatccggcggcgattttgcctccgTCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTg                                                                                                                 >  3:229069‑M1/112‑149 (MQ=255)                                           cctgcgatggtgaagttattgaagggggtgcatcggtcgatgaaagcgccatcaccggggaatcggcaccggtgatccgtgaatccggcggcgattttgcctccgTCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAg                                                                                                           >  3:227540‑M1/106‑149 (MQ=255)                                                 tCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCaaaa                                                                                                     >  1:519864/1‑149 (MQ=255)                                                   aGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTACGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATc                                                                                                   <  3:308706/149‑1 (MQ=255)                                                       cAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATcgccg                                                                                               >  1:505615/1‑149 (MQ=255)                                                          tttCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGccgccg                                                                                            >  2:33079/1‑149 (MQ=255)                                                                  ggCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACg                                                                                    <  1:312309/149‑1 (MQ=255)                                                                    cGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGa                                                                                  <  4:336920/149‑1 (MQ=255)                                                                            gTCGCTGTGCGCCTTCCACCATCGCGATCATCCGGTCCAGTAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGACAGTATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATGACCGGt                                                                          >  1:233529/1‑149 (MQ=255)                                                                                 tgtgCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGa                                                                     <  2:397632/149‑1 (MQ=255)                                                                                      gcCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTccc                                                                <  3:92360/149‑1 (MQ=255)                                                                                       ccTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTcccc                                                               <  2:505615/149‑1 (MQ=255)                                                                                         ttCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCgg                                                             >  1:497272/1‑149 (MQ=255)                                                                                         ttCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCgg                                                             >  1:19234/1‑149 (MQ=255)                                                                                          tCCACCATCGCGATCATCCGATCCAGATATTTCGCGCCGGGGTTAACGCTACTCTCAATCACCAGCCAGGCAGAAAGAATACTCGTGCCGCCGGTGGCGGAGGCAAAATCGCCGCCGGATTTACGGATCACCGGTGCCGATTCCCCGGt                                                            <  2:134463/149‑1 (MQ=255)                                                                                          tCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGt                                                            <  4:70800/149‑1 (MQ=255)                                                                                             accaTCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGAt                                                         <  4:211051/149‑1 (MQ=255)                                                                                             accaTCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGAt                                                         <  4:68499/149‑1 (MQ=255)                                                                                              ccaTCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCCGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATg                                                        <  3:491415/149‑1 (MQ=255)                                                                                               caTCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATgg                                                       >  4:508436/1‑149 (MQ=255)                                                                                                aTCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGgc                                                      >  2:346266/1‑149 (MQ=255)                                                                                                    cgATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCtt                                                  <  1:314526/149‑1 (MQ=255)                                                                                                    cgATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCtt                                                  >  1:472917/1‑149 (MQ=255)                                                                                                             gATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGAcc                                         >  3:413890/1‑149 (MQ=255)                                                                                                              aTCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCg                                        >  2:249065/1‑149 (MQ=255)                                                                                                                 cAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATg                                     >  1:556008/1‑149 (MQ=255)                                                                                                                 cAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATg                                     >  3:75698/1‑149 (MQ=255)                                                                                                                       tGTCTAGCCGGGGTTAACGCTACACTCTATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCAcccc                               <  4:489913/149‑1 (MQ=255)                                                                                                                        gTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCAccccc                              <  3:172885/149‑1 (MQ=255)                                                                                                                           tcGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTc                           >  1:538710/1‑149 (MQ=255)                                                                                                                              ccGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAAt                        <  1:360181/149‑1 (MQ=255)                                                                                                                                 gggTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAAc                     >  2:406288/1‑149 (MQ=255)                                                                                                                                    ttAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAGAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCCATAACTTc                  <  2:119552/149‑1 (MQ=255)                                                                                                                                     tAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCa                 >  4:163760/1‑149 (MQ=255)                                                                                                                                      aaCGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCAc                >  4:437104/1‑149 (MQ=255)                                                                                                                                         gCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCAt             >  2:338448/1‑149 (MQ=255)                                                                                                                                         gCTAAACTCAATCACCAGCCAGTTAGAAAGAATACGCGGGCCGCCGGGGGCGGAGGCAAAATCGCCGCCGGAGTCACGGATCACCGGTGCCGACTCCACGGTGATGGCGCTATAATAAACCGATGCAGCGCCTTGAATTACTTCACCAt             >  2:57084/1‑149 (MQ=255)                                                                                                                                                tCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAggg      >  1:133720/1‑149 (MQ=255)                                                                                                                                                tCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAggg      >  3:249794/1‑149 (MQ=255)                                                                                                                                                  aaTCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGa    <  1:347535/149‑1 (MQ=255)                                                                                                                                                  aaTCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGa    >  4:155583/1‑149 (MQ=255)                                                                                                                                                   aTCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCTCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGat   >  4:214018/1‑149 (MQ=255)                                                                                                                                                   aTCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGat   >  4:286554/1‑149 (MQ=255)                                                                                                                                                    TCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGata  <  2:293874‑M1/149‑1 (MQ=255)                                                                                                                                                    |                                                                                                                                                     TGGCGGTTGCCAGTAAAAAGACGATAGTCAGGGCAATCAGCAGAATGGTCAGGGCAATTTCGTTCGGCGTTTTGCGTCGCTGTGCGCCTTCCACCATCGCGATCATCCGATCCAGAAATGTCTCGCCGGGGTTAACGCTACACTCAATCACCAGCCAGTCAGAAAGAATACGCGTGCCGCCGGTGACGGAGGCAAAATCGCCGCCGGATTCACGGATCACCGGTGCCGATTCCCCGGTGATGGCGCTTTCATCGACCGATGCACCCCCTTCAATAACTTCACCATCGCAGGGGATA  >  NC_000913/726325‑726620

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.