New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3764228	0 (0.000)	3 (0.050)	3/260	NT	100%	coding (2046/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor
	?	NC_000913	= 3764260	NA (NA)					coding (2078/4134 nt)	rhsA	Rhs protein with putative toxin 55 domain; putative polysaccharide synthesis/export protein; putative neighboring cell growth inhibitor

GCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATA  >  NC_000913/3764080‑3764376                                                                                                                                                     |                                                                                                                                                     gcAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACC                                                                                                                                                      >  3:260517‑M1/1‑149 (MQ=255)                                          aCCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCAC‑‑‑‑‑GACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggt                                                                                                        <  2:546934‑M1/149‑47 (MQ=255)                                                                         gTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCagaccctcatcctcgctgcggataagtttgccggt                                                                                                                   <  1:482946‑M1/112‑36 (MQ=255)                                                                         gTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCagaccctcatcctcgctgcggataagtttgccggt                                                                                                                   >  2:482946‑M1/1‑77 (MQ=255)                                                                                                                                                 tGACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcagg      <  3:13107‑M1/149‑145 (MQ=255)                                                                                                                                                 tGACCagaccatcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaatggaaggtggtgtggctgccgttttcactggtcagg      >  4:369175‑M1/1‑5 (MQ=255)                                                                                                                                                  gACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggc     <  2:37162‑M1/149‑146 (MQ=255)                                                                                                                                                  gACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggc     <  2:54602‑M1/149‑146 (MQ=255)                                                                                                                                                  gACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggc     <  2:234772‑M1/149‑146 (MQ=255)                                                                                                                                                  gACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggc     <  2:107053‑M1/149‑146 (MQ=255)                                                                                                                                                  gACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggc     <  1:93320‑M1/149‑146 (MQ=255)                                                                                                                                                  gACCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggc     <  4:298752‑M1/149‑146 (MQ=255)                                                                                                                                                   aCCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcg    >  4:261220‑M1/1‑3 (MQ=255)                                                                                                                                                   aCCagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcg    >  4:163163‑M1/1‑3 (MQ=255)                                                                                                                                                    ccagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgg   <  1:137891‑M1/149‑148 (MQ=255)                                                                                                                                                    ccagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgg   >  4:178165‑M1/1‑2 (MQ=255)                                                                                                                                                    ccagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgg   <  3:515215‑M1/149‑148 (MQ=255)                                                                                                                                                    ccagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtg                                 <  3:433196‑M1/119‑118 (MQ=255)                                                                                                                                                    ccagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtg                                 >  4:433196‑M1/1‑2 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  <  3:46075‑M1/149‑149 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  >  3:469684‑M1/1‑1 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  <  3:28346‑M1/149‑149 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  <  4:19356‑M1/149‑149 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  <  4:297055‑M1/149‑149 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  <  1:470741‑M1/149‑149 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgc                       <  2:129773‑M1/128‑128 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgc                       >  1:129773‑M1/1‑1 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggc                          <  4:137423‑M1/125‑125 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggtttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggc                          >  3:137423‑M1/1‑1 (MQ=255)                                                                                                                                                     cagaccctcatcctcgctgcggataagtttgccggtcaggtcgtggtgataacgctgtgtgcggccgtcaaagccggcttcctgtatcagccggtcaagtacatcgtaacggaaggtggtgtggctgccgttttcactggtcaggcgga  >  3:148570‑M1/1‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                     GCAGTATGGAATACGATGCTGCCGGACGGGTCATCCGCCTGACCAGTGAAAACGGCAGCCACACCACCTTCCGTTACGATGTACTTGACCGGCTGATACAGGAAACCGGCTTTGACGGCCGCACACAGCGTTATCACCACGACCTGACCGGCAAACTTATCCGCAGCGAGGATGAGGGTCTGGTCACCCACTGGCACTATGACGAAGCAGACCGCCTCACGCACCGCACCGTGAAGGGTGAAACCGCAGAGCGGTGGCAGTATGACGAACGTGGCTGGCTGACAGACATCAGCCATA  >  NC_000913/3764080‑3764376

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.