| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 4125820 | 169 (0.910) | 13 (0.070) +CTG |
3/490 | 16.7 | 6.9% | coding (991/2199 nt) | priA | Primosome factor n' (replication factor Y) |
| ? | NC_000913 | 4125821 = | 178 (0.930) | coding (990/2199 nt) | priA | Primosome factor n' (replication factor Y) | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4125548‑4125820‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCTGCTTGTAGGAGCTGTCGTGCTCTTCATCAATGACAATCACGCCGAGATTTTTAAACGGCGTAAACAGCGCGGAGCGGGTGCCGATCACAATCGCCGCCTCACCATTTTTCGCTTTCAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGAATG > NC_000913/4125821‑4125982 ||| GACCTTGTTATCAGCCTGTAACGGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCTAGCACATGTTGAATTGCCGTACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTG < 2:771927/276‑1GACCTGGTTAACAGCCTGTCAAGGCTGGCCCATCATAGTGATTAACGCCGTGGCCAGCCCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACAGGTTGAAGTGCCGGACGCGCATTCCCGGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTG < 2:182804/276‑1 ACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTG < 1:686183/275‑1 ggtgtgcggccgcTAAATGCTGGAGCAAACGGTGGATTAACGCCGGGGCCAGACCTGCCTGCACCTTCGGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTG < 3:172781/261‑1 GGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCACGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTGC > 1:189581/1‑275 GTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTG < 1:421016/273‑1 GTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTG < 1:6435/273‑1 GCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGCCGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCTGTGCCAAGAACAATCGGGATTTGCTAGCTGTGCGCACGATACACCGCCAGGTCACGGGCATGATCGGGCCCGCCTTCCGGCcgatcgtaggag > 4:153930/1‑264 TGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCCGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTGCctgttggggct > 3:788508/1‑264 TGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATACAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCTGACGGGTCAGGCGCAGCAGGCGGTATTTTTGATGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGCGCCAAGAATACACGGGATTTGCACGCTGGTCGCCCACGAAACCGCCAGGTCGCGGGCTTGATAGCGCCAGCCTTCCTGCCGCcgacaggagg > 3:603624/1‑264 TGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTG < 3:434505/119‑1 TTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTGCTGCTTGTAGGAGCTGTCGTGCTCTTCATCAATGACAATCACGCCGAGATTTTTAAACGGCGTAAACAGCGCGGAGCGGGTGCCGATCACAATCGCCGCCTCACCATTTTTCGCTTTCAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGA > 4:730979/1‑219 CTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTCCTGCTGCTGCTTGTAGGAGCTGTCGTGCTCTTCATCAATGACAATCACGCCGAGATTTTTAAACGGCGTAAACAGCGCGGAGCGGGTGCCGATCACAATCGCCGCCTCACCATTTTTCGCTTTCAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGAATG < 2:730979/219‑1 ||| GACCTGGTTATCAGCCTGTAAATGCTGGCGCATACGAGTGATTAACGCCGGAGCCAGACCTGCCTGCACCTTCTGACCTTTTAAATCCAGCACATGTTGAATTGCCGGACGCGCATTCCCTGCCCGACGGGTCAGGCGCAGCAGGCGGTATTTTTTCTGCTGGACGTTGCATAACGTTTCCAGCGCGGGCGTTGCGGAGCCAAGAATAATCGGGATTTGCTCGCTGTGCGCACGATACACCGCCAGGTCGCGGGCATGATAGCGCCAGCCTTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913/4125548‑4125820‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CTGCTGCTTGTAGGAGCTGTCGTGCTCTTCATCAATGACAATCACGCCGAGATTTTTAAACGGCGTAAACAGCGCGGAGCGGGTGCCGATCACAATCGCCGCCTCACCATTTTTCGCTTTCAGCCACGCCGAAAGACGCTCGCTGTCGTTCAGGCCGGAATG > NC_000913/4125821‑4125982 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |