New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 93541135 (0.850)13 (0.080) 11/260 NT 8.8% coding (376/1488 nt) murE UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase
?NC_000913 = 93563 137 (0.890)coding (398/1488 nt) murE UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate:meso‑ diaminopimelate ligase

GGGCGATCTCTTTGTAGCTGTAGTAGGTCATCAGGCGGACGGGCGTCGATATATCCCGCAGGCGATAGCGCAAGGTGTGGCTGCCATTATTGCAGAGGCGAAAGATGAGGCGACCGATGGTGAAATCCGTGAAATGCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/93267‑93541
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcAGTTGGCTCCACTGCGCCAACAGCTGGGTAGTCGTGGTTTTGCCGTTGGTGCCCGTTACGCCCACGAGACGTAAATTGTCAGAGGGTTCATGGTAAAAGCGGCCCGCCAGTGCAGATAAACGCTCGTTGAGCTGGCTGAGATAGATGACCGGTACGCCGTGCATTTCACGGATTTCACCATCGGTCGCCTCATCTTTCGCCTCTGCAATAATGGCAGCCACACCTTGCGCTATCGCCTGCGGGATATATCGACGCCCGTCCGCCTGATGACCT  <  NC_000913/93563‑93291
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
gggctatacCTTTGTAGCTGTATTAGGGCAGCAGGCGGACGGGCGTCGATATATCCCGCAGGCGATAGCGCAAGGTGTGGCTGCCATTATTGCAGAGGCGAAAGATTAGGCGACCGATGGTGAAATCCGTGAAATGCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCA                                                                                                                                                                                                                                                                                     <  2:276365/264‑1
                                                                                                                             TCCGTGAAATGCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCA                                                                                                                                                                                                                                                                                     >  5:567382/1‑148
                                                                                                                              CCGTGAAATGCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAG                                                                                                                                                                                                                                                                                    <  6:567382/148‑1
                                                                                                                                 TGAAATGCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAG                                                                                                                                                                                                                                                                                 >  5:940344/1‑148
                                                                                                                                                 CCGGTCAGCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCC                                                                                                                                                                                                                                                                 >  7:1106915/1‑148
                                                                                                                                                    GTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAAC                                                                                                                                                                                                                                                              <  6:940344/148‑1
                                                                                                                                                     TCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACA                                                                                                                                                                                                                                                             <  8:1106915/148‑1
                                                                                                                                                             CTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAGC                                                                                                                                                                                                                                                           <  5:240906/142‑1
                                                                                                                                                             CTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAGC                                                                                                                                                                                                                                                           >  6:240906/1‑142
                                                                                                                                                                                                        TTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAGCT                                                                                                                                                                                                                                                          <  7:428481/100‑1
                                                                                                                                                                                                        TTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAGCT                                                                                                                                                                                                                                                          >  8:428481/1‑100
                                                                                                                                                                                                                     CTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGCCTACCCAGCAGTTGGCTCCACTGCGCCAACAG                                                                                                                                                                                                                                                            <  8:574860/85‑1
                                                                                                                                                                                                                     CTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAG                                                                                                                                                                                                                                                            >  7:574860/1‑85
                                                                                                                                                                                                                          ACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAGC                                                                                                                                                                                                                                                           >  8:1085903/1‑81
                                                                                                                                                                                                                          ACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAGC                                                                                                                                                                                                                                                           <  7:1085903/81‑1
                                                                                                                                                                                                                               TTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAG                                                                                                                                                                                                                                                            >  7:712777/1‑75
                                                                                                                                                                                                                               TTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGCAGTTGGCTCCACTGCGCCAACAG                                                                                                                                                                                                                                                            <  8:712777/75‑1
                                                                                                                                                                                                                                                                                AGCAGTTGGCTCCACTGCGCCAACAGCTGGGTAGTCGTGGTTTTGCCGTTGGTGCCCGTTACGCCCACGAGACGTAAATTGTCAGAGGGTTCATGGTAAAAGCGGCCCGCCAGTGCAGATAAACGCTCGTTGAGCTGGCTGAGATAGA                                                                                                                                  >  7:559413/1‑148
                                                                                                                                                                                                                                                                                AGCAGTTGGCTCCACTGCGCCAACAGCTGGGTAGTCGTGGTTTTGCCGTTGGTGCCCGTTACGCCCACGAGACGTAAATTGTCAGA                                                                                                                                                                                                <  7:505498/86‑1
                                                                                                                                                                                                                                                                                AGCAGTTGGCTCCACTGCGCCAACAGCTGGGTAGTCGTGGTTTTGCCGTTGGTGCCCGTTACGCCCACGAGACGTAAATTGTCAGA                                                                                                                                                                                                >  8:505498/1‑86
                                                                                                                                                                                                                                                                                 GCAGTTGGCTCCACTGCGCCAACAGCTGGGTAGTCGTGGTTTTGCCGTTGGTGCCCGTCACGCCCACGAGACGTAAATTGTCAGAGTGTTCCTGGTAAAAGCGGCCCGCCAGTGCAGATAAACGCTCGTTGAGCTGGCTGAGATAGATGAACGGTAAGCCGTGCATTACACGGATTTCACCATCGGTCGCCTCCTCTTTCGCCTCTGCAATAATGGAAGCCAAACCTTGCGACCACGCCTGCGGGATATATAGACGCCCGGCCGCCTGCTGACCa  >  1:95653/1‑274
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    
GGGCGATCTCTTTGTAGCTGTAGTAGGTCATCAGGCGGACGGGCGTCGATATATCCCGCAGGCGATAGCGCAAGGTGTGGCTGCCATTATTGCAGAGGCGAAAGATGAGGCGACCGATGGTGAAATCCGTGAAATGCACGGCGTACCGGTCATCTATCTCAGCCAGCTCAACGAGCGTTTATCTGCACTGGCGGGCCGCTTTTACCATGAACCCTCTGACAATTTACGTCTCGTGGGCGTAACGGGCACCAACGGCAAAACCACGACTACCCAGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/93267‑93541
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agcAGTTGGCTCCACTGCGCCAACAGCTGGGTAGTCGTGGTTTTGCCGTTGGTGCCCGTTACGCCCACGAGACGTAAATTGTCAGAGGGTTCATGGTAAAAGCGGCCCGCCAGTGCAGATAAACGCTCGTTGAGCTGGCTGAGATAGATGACCGGTACGCCGTGCATTTCACGGATTTCACCATCGGTCGCCTCATCTTTCGCCTCTGCAATAATGGCAGCCACACCTTGCGCTATCGCCTGCGGGATATATCGACGCCCGTCCGCCTGATGACCT  <  NC_000913/93563‑93291

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.