| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 284258 = | 115 (0.730) | 6 (0.040) | 6/254 | NT | 5.4% | coding (1058/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein |
| ? | NC_000913 | 284307 = | 102 (0.680) | coding (1107/1968 nt) | yagF | CP4‑6 prophage; dehydratase family protein | |||||
AGCGATGTTGCCCGTCGGGAAGCAGACCGTCGAGGTCAGCCCTTTCGCTTTTGCCTTCTCCGGCGGCAGGATCACGTCATCCGGCTCTACGCCGTCCTGCTCGCGCAGGCACTGGCGGAAGCGCGCCCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/284535‑284258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC > NC_000913/284307‑284392 AGCGATGTTGCCCGTCGGGAAGCAGACCGTCGAGGTCAGCCCTTTCGCTTTTGCCTTCTCCGGCGGCAGGATCACGTCATCCGGCTCTACGCCGTCCTGCTCGCGCAGGCACTGGCGGAAGCGCGCCCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGT < 2:212365/275‑1AGCGATGTTGCCCGTCGGGAAGCAGACCGTCGAGGTCAGCCCTTTCGCTTTTGCCTTCTCCGGCGGCAGGATCACGTCATCCGGCTCTACGCCGTCCTGCTCGCGCAGGCACTGGCGGAAGCGCGCCCCGCGCTCGGACGCCTGCCCCCATTCCAGGTTCTCGCCCACCCCCTGGCCGGTCACGGTCATGCCGTCCAGATGCAGCAGGCCGAGGTCGCGCCGGGGCCGCATCCCCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCCCGGTCGGG > 4:83176/1‑274 AGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT > 8:463364/1‑124 AGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT < 7:463364/124‑1 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG > 5:1076225/1‑110 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG < 6:1076225/110‑1 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGG < 8:315920/107‑1 ACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGG > 7:315920/1‑107 CGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGG > 5:534522/1‑83 CGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGG < 6:534522/83‑1 ATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG < 6:886014/78‑1 ATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTG > 5:886014/1‑78 ACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATAGTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGA > 7:823534/1‑124 ACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATAGTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGA < 8:823534/124‑1 CTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAA > 6:520117/1‑116 CTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGATGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAA < 5:520117/116‑1 TCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGGTGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC < 7:450177/129‑1 TCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGGTGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC > 8:450177/1‑129 AGCGATGTTGCCCGTCGGGAAGCAGACCGTCGAGGTCAGCCCTTTCGCTTTTGCCTTCTCCGGCGGCAGGATCACGTCATCCGGCTCTACGCCGTCCTGCTCGCGCAGGCACTGGCGGAAGCGCGCCCGGCGCTCGGACGCCTGCCACCATTCAAGGTTCTCGCCCACCGTCTGGCCGGTCACGGTCATGGCGTCCAGATGCAGCAGGCCGAGGTCGCGCAGGTGGAGCATCACCTCCGGCACGCCGCCCGCGAGGAAGGCGCGCACGGTCGGGTGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913/284535‑284258‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ggtgatGCTCCACCTGCGCGACCTCGGCCTGCTGCATCTGGACGCCATGACCGTGACCGGCCAGACGGTGGGCGAGAACCTTGAATGGTGGC > NC_000913/284307‑284392 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |