New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 931034	70 (0.440)	4 (0.030)	4/250	NT	5.6%	intergenic (‑72/+51)	cydD/trxB	glutathione/cysteine ABC transporter export permease/ATPase/thioredoxin reductase, FAD/NAD(P)‑binding
	?	NC_000913	= 931049	69 (0.460)					intergenic (‑87/+36)	cydD/trxB	glutathione/cysteine ABC transporter export permease/ATPase/thioredoxin reductase, FAD/NAD(P)‑binding

AGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAATATTCTCCATAATCATATGTTGCAGAATTCGCGCCATGAACCAGGCCTGGGCAATGATCAATATGCCGCTCACAAAGCCCAGCAGACGAGAAATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/930757‑931034 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcgacACCATGCGACTATGGGTCGCCTTTATTTTTTCCCCGTTGTAACATTGCTCTGCAAATAATTCTGATAACTCACCTGCTAAGCGTGCAATGAATAAATCTCGTCAAAAAGAGTTAACCCGCTGGTTAAAACAGCAAAGCGTCATCTCCCAACGTTGGCTGAATATTTCTCGTCTGCTGGGCTTTGTGAGCGGCATATTGATCATTGCCCAGGCCTGGTTCATGGCGCGAATTCTGCAACATATGATTATGGAGAATATTCCCCGTGAAGCC  <  NC_000913/931049‑930780                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      agaaaaGTAAAGGGAAGCAGCAGGGCGTAACGGGGAATATTCTACCTAATCATATGTGTCAGAATTCACGCCCGGAACCACGCCTGGGAAATGATCAATATGCCTCTCACAAAGCCCAGCAGACGAGAAATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTGTAAACAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGCAAAAATAAAGGC                                                                                                                                                                                                                                                                                   <  4:454929/269‑1  GTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAATATTCTCCATAATCATATGTTGCAGAATTCGCGCCATGAACCAGGCCTGGGCAATGATCAATATGCCGCTCACAAAGCCCAGCAGACGAGAAATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGGTTAGCAGGTGAGTTTTCAGAATTATTTGCAGGACATTGTTACAACGGGTAAAAAATAAAGGCG                                                                                                                                                                                                                                                                                  >  4:361547/1‑275  GTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAATATTCTCCATAATCATATGTTGCAGAATTCGCGCCATGAACCAGGCCTGGGCAATGATCAATATGCCGCTCACAAAGCCCAGCAGACGAGAAATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTTAGTTATCAGAATTATTTGCAGTGCAATGTTACAACGGGGAAACAATAA                                                                                                                                                                                                                                                                                       >  2:454930/1‑270                 GCAGCAGGGCTTCACGGGGAATATTCTCCATAATCATATGTTGCAGAATTCGCGCCATGAACCAGGCCTGGGCAATGATCAATATGCCGCTCACAAAGCCCAGCAGACGAGAAATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCCGGTGAGTTATCAGAATTATTTGCAGACCAATGTTACAACGGGGAAAAAAAAAGGGC                                                                                                                                                                                                                                                                                   >  4:288007/1‑259                                                                                                                                 AATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCG                                                                                                                                                                                                                                                                                  <  6:167307/148‑1                                                                                                                                      TCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAA                                                                                                                                                                                                                                                                                       >  5:12649/1‑138                                                                                                                                      TCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAA                                                                                                                                                                                                                                                                                       <  6:12649/138‑1                                                                                                                                                             CTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGC                                                                                                                                                                                                                                                                                   >  5:1015838/1‑119                                                                                                                                                             CTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGC                                                                                                                                                                                                                                                                                   <  6:1015838/119‑1                                                                                                                                                                             AGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCG                                                                                                                                                                                                                                                                                  >  8:492666/1‑104                                                                                                                                                                             AGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCG                                                                                                                                                                                                                                                                                  <  7:492666/104‑1                                                                                                                                                                                    TAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAG                                                                                                                                                                                                                                                                                     >  5:183263/1‑94                                                                                                                                                                                    TAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAG                                                                                                                                                                                                                                                                                     <  6:183263/94‑1                                                                                                                                                                                         CTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGA                                                                                                                                                                                                                                                                                 <  5:495111/93‑1                                                                                                                                                                                         CTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGA                                                                                                                                                                                                                                                                                 >  6:495111/1‑93                                                                                                                                                                                                                     CTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGACACCATGCGACTATGGGTCGC                                                                                                                                                                                                                                                            >  8:193264/1‑86                                                                                                                                                                                                                     CTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGACACCATGCGACTATGGGTCGC                                                                                                                                                                                                                                                            <  7:193264/86‑1                                                                                                                                                                                                                                               TTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGACACCATGCGACTATGG                                                                                                                                                                                                                                                                 >  6:1042404/1‑55                                                                                                                                                                                                                                               TTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGACACCATGCGACTATGG                                                                                                                                                                                                                                                                 <  5:1042404/55‑1                                                                                                                                                                                                                                                                                AGGCGACACCATGCGACTATGGGTCGCCTTTATTTTTTCCCCGTTGTAACATTGCTC                                                                                                                                                                                                                              <  5:953931/57‑1                                                                                                                                                                                                                                                                                AGGCGACACCATGCGACTATGGGTCGCCTTTATTTTTTCCCCGTTGTAACATTGCTC                                                                                                                                                                                                                              >  6:953931/1‑57                                                                                                                                                                                                                                                                                  GCGACACCATGCGACTATGGGTCGCCTTTATTTTTTCCCCGTTGTAACATTGCTCTGCAAATAATTCTGATAACTCACCTGCTAAGCGTGCAATGAATAAATCTCGTCAAAAAGAGTTAACCCGCTGGTTAAAACAGCAAAGCGTCATCTCCCAACGTTGGCTGAATATTTCTCGTCTGCTGGGCTTTGTGAGCGGCATATTGATCATTGCCCAGGCCTGGTTCATGGCGCGAATTCTGCAACATATGATTATGGAGAATATTCCCCGTGAAGCC  >  2:418994/1‑275                                                                                                                                                                                                                                                                                    GACACCATGCGACTATGGGTCGCCTTTATTTTTTCCCCGTTGTAACATTGCTCTGCAAATAATTCTGATAACTCACCTGCTAAGCGTGCAATGAATAAATCTCGTCAAAAAGAGTTAACCCGCTGGTTAAAACAGCAAAGCGTCATCTCCCAACGTTGGCTGAATATTTCTCGTCTGCTGGGCTTTGTGAGCGGC                                                                                >  2:436757/1‑195                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      AGTAACGTAAAGGGAAGCAGCAGGGCTTCACGGGGAATATTCTCCATAATCATATGTTGCAGAATTCGCGCCATGAACCAGGCCTGGGCAATGATCAATATGCCGCTCACAAAGCCCAGCAGACGAGAAATATTCAGCCAACGTTGGGAGATGACGCTTTGCTGTTTTAACCAGCGGGTTAACTCTTTTTGACGAGATTTATTCATTGCACGCTTAGCAGGTGAGTTATCAGAATTATTTGCAGAGCAATGTTACAACGGGGAAAAAATAAAGGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/930757‑931034 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaggcgacACCATGCGACTATGGGTCGCCTTTATTTTTTCCCCGTTGTAACATTGCTCTGCAAATAATTCTGATAACTCACCTGCTAAGCGTGCAATGAATAAATCTCGTCAAAAAGAGTTAACCCGCTGGTTAAAACAGCAAAGCGTCATCTCCCAACGTTGGCTGAATATTTCTCGTCTGCTGGGCTTTGTGAGCGGCATATTGATCATTGCCCAGGCCTGGTTCATGGCGCGAATTCTGCAACATATGATTATGGAGAATATTCCCCGTGAAGCC  <  NC_000913/931049‑930780

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.