New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 2925373	151 (0.960)	8 (0.050)	7/254	NT	5.0%	coding (26/849 nt)	queF	7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)
	?	NC_000913	= 2925381	158 (1.050)					coding (34/849 nt)	queF	7‑cyano‑7‑deazaguanine reductase (NADPH‑dependent)

CACGCATCGCAGTAGCGTGCAGTAAAATCTTTCAGGGCTTGTGCGGTCAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2925222‑2925373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGATTTTACTGCACGCTACTGCGATGCGTGGCATGAAGAGCATAAAAGCTGGCCGTTAAGTGAGGAACTGTACGGTGTTCCTTCACCGTGCATTATTTCAACTACCGAAGATGCCGTATACTGGCAACCCCAGCCGTTTACCGG  <  NC_000913/2925381‑2925108                                                                                                                                                                                                                                                                                                                                                                                                                                            CACGCATCGCAGTAGCGTGCAGTAAAATCTTTCAGGGCTTGTGCGGTCAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATC                                                                                                                                                                                                                                                                                        <  8:27792/148‑1                                                CAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATC                                                                                                                                                                                                                                                                                        >  8:940876/1‑101                                                CAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATC                                                                                                                                                                                                                                                                                        <  7:940876/101‑1                                                        CCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTG                                                                                                                                                                                                                                                                       >  8:778630/1‑110                                                        CCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTG                                                                                                                                                                                                                                                                       <  7:778630/110‑1                                                                TTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAG                                                                                                                                                                                                                                                                                      >  5:552990/1‑87                                                                TTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAG                                                                                                                                                                                                                                                                                      <  6:552990/87‑1                                                                       TTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                                                                                                                                                                     >  8:602181/1‑97                                                                       TTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                                                                                                                                                                     <  7:602181/97‑1                                                                           CTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC                                                                                                                                                                                                                                                                                    >  7:528826/1‑78                                                                           CTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC                                                                                                                                                                                                                                                                                    <  8:528826/78‑1                                                                                             GTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGATGGTT                                                                                                                                                                                                                                                                 >  7:302303/1‑79                                                                                             GTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGATGGTT                                                                                                                                                                                                                                                                 <  8:302303/79‑1                                                                                                         ATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                                                                                                                                                                     <  6:387946/63‑1                                                                                                         ATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGCCCGCAAGTGCCTGAT                                                                                                                                                                                                                                                                     >  5:387946/1‑63                                                                                                                                                   TCAGGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGA                                                                                                                                               <  6:643986/139‑1                                                                                                                                                   TCAGGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGA                                                                                                                                               >  5:643986/1‑139                                                                                                                                                      GGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACG                                                                                                                                                                        >  3:27264/1‑111                                                                                                                                                      GGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAG                                                                                                                                                                                              >  7:991/1‑89                                                                                                                                                      GGCCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAG                                                                                                                                                                                              <  8:991/89‑1                                                                                                                                                        CCCGGAAGTGCCTGATGAGTTGCAGAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGATTTTACTGCACGCTACTGCGATGCGTGGCATGAAGAGCATAAAAGCTGGCCGTTAAGTGAGGAACTGTACGGTGTTCCTTCACCGTGCAGTATTTCAACTACCGAAGATGCCGTATACTGGCAACCCCAGCCGTTTACCGG  <  2:127966/275‑1                                                                                                                                                                                                                                                                                                                                                                                                                                            CACGCATCGCAGTAGCGTGCAGTAAAATCTTTCAGGGCTTGTGCGGTCAAATCGTCCACTAATTTCTCTCTTCACTTAAACCAGATACACTTGTCGTTTAGTTTATCTGGTTTATGACGGTGAAACATGTCTTCTTATGCAAACCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/2925222‑2925373 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tcaggcCCGCAAGTGCCTGATGGTTTGCATAAGAAGACATGTTTCACCGTCATAAACCAGATAAACTAAACGACAAGTGTATCTGGTTTAAGTGAAGAGAGAAATTAGTGGACGATTTGACCGCACAAGCCCTGAAAGATTTTACTGCACGCTACTGCGATGCGTGGCATGAAGAGCATAAAAGCTGGCCGTTAAGTGAGGAACTGTACGGTGTTCCTTCACCGTGCATTATTTCAACTACCGAAGATGCCGTATACTGGCAACCCCAGCCGTTTACCGG  <  NC_000913/2925381‑2925108

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.