New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3330557	NA (NA)	6 (0.040) +AATT	4/258	NT	NA	noncoding (98/98 nt)	RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP243 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	3774198 =	NA (NA)					intergenic (+4/‑226)	mtlA/mtlD	mannitol‑specific PTS enzyme: IIA, IIB and IIC components/mannitol‑1‑phosphate dehydrogenase, NAD‑dependent

CAAATTCAACATATTGCAATTC‑TCTTGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3330503‑3330557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTG  >  NC_000913/3774198‑3774236                                                         ||||                                        CAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTG  <  7:72373/99‑1 CAAATTCAACAAATTGTGATGCATCCTGTAGGCCTGATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTG  >  8:72373/1‑99                                   TGATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGTGG           >  7:1069646/1‑56                                   TGATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGTGG           <  8:1069646/56‑1                                     ATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGT             >  7:237012/1‑52                                     ATAAGCGTAGCGCATCAGGCAATTAATCCCACCCTCTCCACATGGAGAAGGT             <  8:237012/52‑1                                                         ||||                                        CAAATTCAACATATTGCAATTC‑TCTTGTAGGCCTGATAAGCGTAGCGCATCAGGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/3330503‑3330557 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AATCCCACCCTCTCCACATGGAGAAGGTGGGGTTAATTG  >  NC_000913/3774198‑3774236

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.