New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4593334	NA (NA)	6 (0.040)	6/244	NT	NA	noncoding (9/26 nt)	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences
	?	NC_000913	= 4593342	NA (NA)					noncoding (17/26 nt)	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP349 (repetitive extragenic palindromic) element; contains 1 REP sequences

TGGTATCGATCAGGTTGGCTTAGCGGTTGCTGAGATGGACCGGGTAACTCAACAGAACGCCGCGCTGGTGGAAGAGTCTGCCGCTGCCGCCGCCGCGCTGGAAGAGCAGGCCAGTCGCCTGACCGAAGCAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4593060‑4593334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgataaCATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTGCTGAATCCGGAACACTGCCACTGCTTCGGTCAGGCGACTGGCCTGCTCTTCCAGCGCGGCGGCGGCAGCGGCAGACTCTTCCACCAGCGCGGCGTTCTGTTGAGTTACCCGGTCCATCTCAGCAACCGCTAAGCCAAC  <  NC_000913/4593342‑4593073                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGTATCGATCAGGTTGGCTTAGCGGTTGCTGAGATGGACCGGGTAACTCAACAGAACGCCGCGCTGGTGGAAGAGTCTGCCGCTGCCGCCGCCGCGCTGGAAGAGCAGGCCAGTCGCCTGACCGAAGCAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCTCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAA                                                                                                                                                                                                                                                                                >  2:283621/1‑275                                                                                                                       CTGACCGAAGCAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAAT                                                                                                                                                                                                                                                                                         <  7:356561/148‑1                                                                                                                              AAGCAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGAT                                                                                                                                                                                                                                                                                  <  7:427769/148‑1                                                                                                                                 CAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGC                                                                                                                                                                                                                                                                                       >  5:369757/1‑140                                                                                                                                 CAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGC                                                                                                                                                                                                                                                                                       <  6:369757/140‑1                                                                                                                                       CAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATA                                                                                                                                                                                                                                                                                 <  5:1062968/140‑1                                                                                                                                       CAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATA                                                                                                                                                                                                                                                                                 >  6:1062968/1‑140                                                                                                                                       CAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAA                                                                                                                                                                                                                                                                                          >  7:306875/1‑131                                                                                                                                       CAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACAGCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAA                                                                                                                                                                                                                                                                                          <  8:306875/131‑1                                                                                                                                                    TCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCG                                                                                                                                                                                                                                                                                    <  7:787209/124‑1                                                                                                                                                    TCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCG                                                                                                                                                                                                                                                                                    >  8:787209/1‑124                                                                                                                                                                    GAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGA                                                                                                                                                                                                                                                                                   <  8:1101106/109‑1                                                                                                                                                                    GAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGA                                                                                                                                                                                                                                                                                   >  7:1101106/1‑109                                                                                                                                                                      AACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCC                                                                                                                                                                                                                                                                                      <  7:532671/104‑1                                                                                                                                                                      AACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCC                                                                                                                                                                                                                                                                                      >  8:532671/1‑104                                                                                                                                                                                                     GCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGA                                                                                                                                                                                                                                                                                   <  7:630258/76‑1                                                                                                                                                                                                     GCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGA                                                                                                                                                                                                                                                                                   >  8:630258/1‑76                                                                                                                                                                                                                        CCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAACATTTTGCT                                                                                                                                                                                                                                                                       >  6:682802/1‑69                                                                                                                                                                                                                        CCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAACATTTTGCT                                                                                                                                                                                                                                                                       <  5:682802/69‑1                                                                                                                                                                                                                              CAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAACATTTTGCTTATCG                                                                                                                                                                                                                                                                  <  7:187087/68‑1                                                                                                                                                                                                                              CAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAACATTTTGCTTATCG                                                                                                                                                                                                                                                                  >  8:187087/1‑68                                                                                                                                                                                                                                       AGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAACATTTTGCTTATC                                                                                                                                                                                                                                                                   >  6:136309/1‑58                                                                                                                                                                                                                                       AGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAACATTTTGCTTATC                                                                                                                                                                                                                                                                   <  5:136309/58‑1                                                                                                                                                                                                                                                                          TGCCCGTGAACATTTTGGTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTTGCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCGGATGTTTCCCGCTGCTGGTGCTGAATCCGGAACACTGCCACTGCTTCGGTCAGGCGACTGGCCTGCTCTTCCAGCGCGGCGGCGGCAGCGGCAGACTCTTCCACCAGCGCGGCGTTCTGTTGAGTTACCCGGTCCATCTCAGCAACCGCTAAG       <  4:78931/275‑1                                                                                                                                                                                                                                                                            CCCGATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTGCTGAATCC                                                                                                                                    <  8:828290/148‑1                                                                                                                                                                                                                                                                              CGATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTT                                                                                                                                                                          <  6:475362/108‑1                                                                                                                                                                                                                                                                              CGATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTT                                                                                                                                                                          >  5:475362/1‑108                                                                                                                                                                                                                                                                               GATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTGCTGAATCCGGA                                                                                                                                 <  5:73534/148‑1                                                                                                                                                                                                                                                                               GATAAAATTTGGTTTATCGGGCATTTTCAGGGCGATAAAAATGTGTCCCAGTCCTCCTCGCTATCGGCCACGGCCATTTGACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTGCTGAATCCGGAACACTGCCACTGCTTCGGTCAGTCGACTGGCCTGCTCTTCCAGCGCGGCGGCGGCAGCGGCAGACTCTTCCACCAGCGCGGCGTTCTGTTGAGTTACCCGGTCCATCTCAGCAACCGCTAAGCCAAC  <  4:20308/275‑1                                                                                                                                                                                                                                                                                ATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTGCTGAATCCGGAACACTGCCACTGCTTCGGTCAGGCGACTGGCCTGCTCTTCCAGCGCGGCGGCGGCAGCGGCAGACTCTTCCACCAGCGCGGCGTTCTGTTGAGTTACCCGGTCCATCCCAGCACCCGCTAAGCCAAC  >  2:158613/1‑274                                                                                                                                                                                                                                                                                ATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTG                                                                                                                                            <  6:395940/136‑1                                                                                                                                                                                                                                                                                ATAACATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTG                                                                                                                                            >  5:395940/1‑136                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   TGGTATCGATCAGGTTGGCTTAGCGGTTGCTGAGATGGACCGGGTAACTCAACAGAACGCCGCGCTGGTGGAAGAGTCTGCCGCTGCCGCCGCCGCGCTGGAAGAGCAGGCCAGTCGCCTGACCGAAGCAGTGGCAGTGTTCCGGATTCAGCAACAGCAGCGTGAAACATCGGCTGTGGTAAAAACCGTGACGCCAGCTGCGCCGCGTAAAATGGCCGTGGCAGATAGCGAGGAGAACTGGGAAACATTTTAATCGCCATGAAAATGCCCGATAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4593060‑4593334 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑atgcccgataaCATTTTGCTTATCGGGCATTTTCATGGCGATTAAAATGTTTCCCAGTTCTCCTCGCTATCTGCCACGGCCATTTTACGCGGCGCAGCTGGCGTCACGGTTTTTACCACAGCCGATGTTTCACGCTGCTGTTGCTGAATCCGGAACACTGCCACTGCTTCGGTCAGGCGACTGGCCTGCTCTTCCAGCGCGGCGGCGGCAGCGGCAGACTCTTCCACCAGCGCGGCGTTCTGTTGAGTTACCCGGTCCATCTCAGCAACCGCTAAGCCAAC  <  NC_000913/4593342‑4593073

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.