New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 4633095	86 (0.540)	6 (0.040)	4/250	NT	6.6%	noncoding (5/140 nt)	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913	= 4633163	89 (0.600)					noncoding (73/140 nt)	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP355 (repetitive extragenic palindromic) element; contains 3 REP sequences

TGGTTACGTTTTGTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4632814‑4633095 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgtaggACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCATCTGGCG  <  NC_000913/4633163‑4632890                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGTTACGTTTTGTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGGGGGGTTGCTGAAAAGCGCTTGATT                                                                                                                                                                                                                                                                                           >  2:498598/1‑275   GTTACGTTTTGTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTCGCTGGAAGAGGGGTTGCTGCAAAGCGATTGATTTT                                                                                                                                                                                                                                                                                         >  1:143852/1‑275     TACGTTTTGTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGT                                                                                                                                                                                                                                                                                       >  4:15987/1‑275        GTTTTGTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGG                                                                                                                                                                                                                                                                                    <  2:126557/275‑1             GTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGT                                                                                                                                                                                                                                                                                       >  2:365661/1‑267                                                                                                                                     CGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTA                                                                                                                                                                                                                                                                                      >  7:297608/1‑148                                                                                                                                                              TAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTT                                                                                                                                                                                                                                                                                          >  6:636191/1‑119                                                                                                                                                              TAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTT                                                                                                                                                                                                                                                                                          <  5:636191/119‑1                                                                                                                                                                      GAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTG                                                                                                                                                                                                                                                                                        >  6:404727/1‑113                                                                                                                                                                      GAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTG                                                                                                                                                                                                                                                                                        <  5:404727/113‑1                                                                                                                                                                                         CGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTT                                                                                                                                                                                                                                                                                         <  7:386619/93‑1                                                                                                                                                                                         CGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTT                                                                                                                                                                                                                                                                                         >  8:386619/1‑93                                                                                                                                                                                                                      AAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGT                                                                                                                                                                                                                                                                                       <  7:573202/66‑1                                                                                                                                                                                                                      AAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGT                                                                                                                                                                                                                                                                                       >  8:573202/1‑66                                                                                                                                                                                                                                  GTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAA                                                                                                                                                                                                         <  5:302267/132‑1                                                                                                                                                                                                                                  GTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAA                                                                                                                                                                                                         >  6:302267/1‑132                                                                                                                                                                                                                                                        AAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTT                                                                                                                                                                                                                      >  7:714349/1‑97                                                                                                                                                                                                                                                        AAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTT                                                                                                                                                                                                                      <  8:714349/97‑1                                                                                                                                                                                                                                                        AAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTT                                                                                                                                                                                                                      <  7:803035/97‑1                                                                                                                                                                                                                                                        AAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTT                                                                                                                                                                                                                      >  8:803035/1‑97                                                                                                                                                                                                                                                                               ggtTTTTGAAGGACGGAAAAGGCGTTCACGCCCCATCCGGCATTCGGTGAACGATGCCGGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCCCTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCG             <  4:47887/272‑1                                                                                                                                                                                                                                                                                     tggAGGCCGGATAAGGGGTTCCCGCCGCTCCCGGAATTCGGGGAACGATGCCGGCTGGGCACCGTCTTATCAGGCCTAAAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCAT        <  4:396178/271‑1                                                                                                                                                                                                                                                                                     TGTAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCATC       <  2:132426/275‑1                                                                                                                                                                                                                                                                                       TAGGACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTG                                                                                                                                    <  8:1123184/148‑1                                                                                                                                                                                                                                                                                       TAGGACGGATAAGGCGTTAACGCCGCATGCGGCATTCGGTGCACGATGCCGGATGCGCCACGTCTTATCAGACCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCAACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGGCCCCAACGCTTCGCGCTCATCTG     <  2:341666/275‑1                                                                                                                                                                                                                                                                                          GACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCATCTGGCG  >  2:150894/1‑275                                                                                                                                                                                                                                                                                          GACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCATCTGGCG  >  1:89304/1‑275                                                                                                                                                                                                                                                                                          GACGGATAAGGCGTTCACGCCGCATCCGGCATGCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATGAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCATCTGGCG  <  2:276611/275‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGTTACGTTTTGTCGACCTGCTTAAGAATGCCTACCAAAACGATCTCCATTTACCGTTGTTAAACCTGATGCTGACGCCAGATGAGCGCGAAGCGTTGGGGACTCGCGTGCGTATTGTCGAAGAGCTGTTGCGCGGCGAAATGAGCCAGCGTGAGTTAAAAAATGAACTCGGCGCAGGCATCGCGACGATTACGCGTGGATCTAACAGCCTGAAAGCCGCGCCCGTCGAGCTGCGCCAGTGGCTGGAAGAGGTGTTGCTGAAAAGCGATTGATTTTGTAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913/4632814‑4633095 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tttgtaggACGGATAAGGCGTTCACGCCGCATCCGGCATTCGGTGCACGATGCCTGATGCGCCACGTCTTATCAGGCCTACAAAATCAATCGCTTTTCAGCAACACCTCTTCCAGCCACTGGCGCAGCTCGACGGGCGCGGCTTTCAGGCTGTTAGATCCACGCGTAATCGTCGCGATGCCTGCGCCGAGTTCATTTTTTAACTCACGCTGGCTCATTTCGCCGCGCAACAGCTCTTCGACAATACGCACGCGAGTCCCCAACGCTTCGCGCTCATCTGGCG  <  NC_000913/4633163‑4632890

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.