New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	832289 =	NA (NA)	5 (0.030)	4/252	NT	NA	noncoding (1/98 nt)	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP75 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 845704	NA (NA)					noncoding (74/99 nt)	RIP78 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP78 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site

AAAGCCGAACCGATCCAGAACGGTCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAA  >  NC_000913/832018‑832558                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                              ggcaggtgcgcccagcaggcagaagaggaggaacaggatccaccgcatgactcctccagggagaaaatagagcaaaaagataagtatagatgctggaggaggggcgattttaaatgagaggaatctggtgtgcctccctttcgggtgaaagggaggaagggatattaagcaggttgctgacaacgtgcgggcttttttgccggatgcggcgtgaacgccttatccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGc                                                                                                                                                                                                                                                                              >  2:204736‑M1/273‑274 (MQ=255) ggcaggtgaggccaggaggcagaagaggatgaacaggatccaccgcctgactcctcaagtgagaaaatagagcaaaaagataagtagagatgctggaggaggggcgagtgtaaatgagaggaatctggtgtgccttcctttcgggtgaaagggaggaagggatattaagcaggttgctgacaacgtgcgggctttttggccggatgcggcgtgaacgccttatccgtcctacaagttcatgcaattttaataagttgccagagatcctgtagGc                                                                                                                                                                                                                                                                              >  4:483041‑M1/273‑274 (MQ=255)   cgCCGAACCGACCCAGAACGGTCGCCAGCAACCTGGCGGCGGCGGTGGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCCCGCCGTGGGGAAGGTGGCGCAAAATCTGCTAGCGCGAAACCTGCAGAAAAACCGGCTCGCCGCCTCGGCGATGCCCAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCGTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTg                                                                                                                                                                                                                                                                           <  4:266138/273‑1 (MQ=255)       gAACCGATCCAGAACGGTCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATgcg                                                                                                                                                                                                                                                                      <  2:372914/275‑1 (MQ=255)                 cgagcGGTCGCCAGACGCGGGGCGGCGGCGGGCGGTGGCAAGGTGGTGGCCGCGGGCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTAt                                                                                                                                                                                                                                                            <  1:134000/271‑1 (MQ=255)                    aCGGTCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATc                                                                                                                                                                                                                                                           <  2:251925/273‑1 (MQ=255)                     cGGTCGCCAGCAACGGGGCGGCGGCGGGCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGTGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAgg                                                                                                                                                                                                                                                        <  1:42150/275‑1 (MQ=255)                        tCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCt                                                                                                                                                                                                                                                     >  2:217506/1‑275 (MQ=255)                             accaccGTGGCGGCGGCGGGGGGGGGGAAGGCGGTGTGCCCGGTCAACCGCAACCACGCCGTGGGGAAGGTTGCCGAAAACCTGCAAGCGGGAAACCTGCAGAAAAACCGCTTCCCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg                                                                                                                                                                                                                                                <  4:267377/270‑1 (MQ=255)                                  cGTGGCGGCGGCGGTCGTGGGCAAGGGGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                                                                                                                                                                            <  2:228520/274‑1 (MQ=255)                                       cgggggcggTGGTGGGAAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCAAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCa                                                                                                                                                                                                                                       <  4:217139/274‑1 (MQ=255)                                       cggcggcggTCGTGGGCGAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAACCCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCa                                                                                                                                                                                                                                       <  1:62830/274‑1 (MQ=255)                                                       cAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCa                                                                                                                                                                                                                       <  2:191304/274‑1 (MQ=255)                                                               ggggcgggggcAACAGCAACCGCGCCGGGGGGAAGGTGGGGCAAAAACTGCAAGCGCGAAAACTGCAGAAAAACCGTGTCGCCGGCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGGGCAGTAATCTTTTATGCCTGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTg                                                                                                                                                                                                               <  4:394955/264‑1 (MQ=39)                                                                    ggggcaaaCGGCAACCCCGCCTTGGGGAAGGTGGTGCAAAATCTGCAACCACGAAACCTGCAAAAAAACCGTCTCGCCGCCTGGGCGATGCCAACCCGGCAGGCGAACAACAACGTCGCCGCCGGCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGc                                                                                                                                                                                                          <  4:192317/268‑1 (MQ=39)                                                                    gctggcAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCGTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGACGTCCGCGTAAACCTGCCGCGGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGc                                                                                                                                                                                                          <  1:157657/269‑1 (MQ=255)                                                                    gctgTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGc                                                                                                                                                                                                          <  2:536399/271‑1 (MQ=255)                                                                    gcgGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGc                                                                                                                                                                                                          >  2:173956/1‑274 (MQ=255)                                                                     cgGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCTGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCACGGCATCAGGCTGATGAAAAAACGCAAAACTGCCTGATGCGCTACGTTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCGTTTGTAGGcag                                                                                                                                                                                                        >  1:151180/1‑273 (MQ=255)                                                                      ggTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCCGGCTGATGAACAAACGCAAAACTGCCTGATGCGGTACGCTTATCAGGCCTACGGGAACTCTGCAATATTTTTAATTTGAATGCCTTGTGAGGCCg                                                                                                                                                                                                        >  4:213346/1‑274 (MQ=255)                                                                      ggTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAAGATGCAAGCGCGAAAACTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACCACGACGTCGCCGCCGTCCGCGGAAACCTGCAGCTGCGCAGTAATCTTGTCTGTCGGGCTCT‑TCCCCGCATCAGCCTGATGACCAAACGACAAACTGCCTGCTGCGATACGCTTAGCCGCCTTACGTTAACTCTGCAATCTTTTGACTTTTCATGCTTTTGTATGcag                                                                                                                                                                                                        >  4:194666/1‑272 (MQ=255)                                                                         ggaCAGCAACCACGACGTGGGGAAGGTGGGGAAAAATCTGCGAACGCGCAACCAGCCGAAAAACCGGCTCGCCGCCTAGGCGAGGCCAAACCGGCAGGCGAACACCACCGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCAGATGAACAAACGCAAAACTGCCTGATGCGCTACGCGTATCAGGCCTGCGTGAACTCTGCAATATGTTGAATTTGCATGCTTTTGTAGGCCGGAt                                                                                                                                                                                                     <  4:85284/272‑1 (MQ=255)                                                                                       ccGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATCCGCTNCCCTTCTAAGGCCTACGTCAACCCGCCCAAATCTTGAATTTGAATCCTTTTGTAGGCCGGCAAATACGTTTAcgct                                                                                                                                                                                       >  3:130362/1‑273 (MQ=255)                                                                                               ggaggaggggcgattttaaatgagaggaatctggtgtgcctccctttcgggtgaaagggaggaagggatattaagcaggttgctgacaacgtgcgggcttttttgccggatgcggcgtgaacgccttatccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGcc                                                                                                                                                                                                                                                                             <  1:61229‑M1/3‑1 (MQ=255)                                                                                               agggTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCGGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGc                                                                                                                                                                              <  2:486269/273‑1 (MQ=255)                                                                                                   gaggggcgattttaaatgagaggaatctggtgtgcctccctttcgggtgaaagggaggaagggatattaagcaggttgctgacaacgtgcgggcttttttgccggatgcggcgtgaacgccttatccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGCCTGAt                                                                                                                                                                                                                                                                         >  3:61229‑M1/175‑181 (MQ=255)                                                                                                      cgcAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTca                                                                                                                                                                        >  2:13/1‑274 (MQ=255)                                                                                                        cAAAACCTCGAAGCGCGAACCCCGCCGAACACCCGCCCGCCCGCCTCGGCGATCCCAAACCGGCAGGCGAACAACACCGTCGCCCCCGTCCGCTGAAACCTGCAGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcaca                                                                                                                                                                      <  4:406750/274‑1 (MQ=37)                                                                                                        aaaaaTCTGCAAGAGCGAACACGGAAGAAAACCCGTCCGCCCGCCGCGGGGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCGGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATTAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTcaca                                                                                                                                                                      <  4:242237/273‑1 (MQ=37)                                                                                                          aaaTTTGCAAGCGCGAACCCGGCAGAACAACCGGCCCGCGTCCTCGGCGAGGCCAAACCGGCGGGCGACAAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCGGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaac                                                                                                                                                                    <  4:227997/274‑1 (MQ=37)                                                                                                          aaaTCTGCAAGCGCGAAACCTACAGAAAAGCCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTAAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCacaac                                                                                                                                                                    <  2:487772/274‑1 (MQ=255)                                                                                                                       cgAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGc                                                                                                                                                      <  4:217505/275‑1 (MQ=255)                                                                                                                                   tgcctccctttcgggtgaaagggaggaagggatattaagcaggttgctgacaacgtgcgggcttttttgccggatgcggcgtgaacgccttatccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGCCTGa                                                                                                                                                                                                                                                                          >  6:804845‑M1/143‑148 (MQ=255)                                                                                                                                       aCCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCCGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCCTCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATCAGGCGTTTACGCCTCATCCGGCATTTCACAACAAGCACTTTTCAGCAATTTAAAAacc                                                                                                                                          >  4:125004/1‑270 (MQ=255)                                                                                                                                                           aTGCCAAACCGGCAGGCGAACAACACCGTCGCCGCCGGCCGCGTAAACCTGCCGTTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTAc                                                                                                                  <  2:258341/275‑1 (MQ=255)                                                                                                                                                                                 acaccGTCGCCGCCGTCCGCGTGACCCTGCCGCTGAGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGt                                                                                            <  2:13254/275‑1 (MQ=255)                                                                                                                                                                                 acaacGCCGCCGCCGGCCGCGTAAACCTGCCGCTGCGAAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGt                                                                                            <  1:3842/275‑1 (MQ=255)                                                                                                                                                                                            gccgTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATAtt                                                                                                                                                                                                                                <  6:88662/132‑1 (MQ=255)                                                                                                                                                                                            gccgTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATAtt                                                                                                                                                                                                                                >  5:88662/1‑132 (MQ=255)                                                                                                                                                                                                                         gccttatccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGCCTGATGCGCTACGCTTATCAg                                                                                                                                                                                                                                                         <  8:913642‑M1/23‑1 (MQ=255)                                                                                                                                                                                                                         gccttatccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGCCTGATGCGCTACGCTTATCAg                                                                                                                                                                                                                                                         >  7:913642‑M1/57‑79 (MQ=255)                                                                                                                                                                                                                               tccgtcctacaagttcatgcaattttaataagttgccagatatgccgtagGCCTGATGCGCTACGCTTATCAg                                                                                                                                                                                                                                                         <  8:701781‑M1/23‑1 (MQ=255)                                                                                                                                                                                                                               tccgtcctacaagttcatgcaattttaataagttgccagatatcctgtagGCCTGATGCGCTACGCTTATCAg                                                                                                                                                                                                                                                         >  7:701781‑M1/51‑73 (MQ=255)                                                                                                                                                                                                                                tgaTGCCGGGC‑ATAGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTg                                                                                                                                                                                                                                         <  5:424281/85‑1 (MQ=21)                                                                                                                                                                                                                                tgaTGCCGGGC‑ATAGCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTg                                                                                                                                                                                                                                         >  6:424281/3‑87 (MQ=21)                                                                                                                                                                                                                                 tATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTa                                                                                                                                                                                                                                                    >  3:106941/1‑75 (MQ=255)                                                                                                                                                                                                                                     cctggatAT‑GACCGGCATCAGGGTGATACACAAACGTAAAACCGCCTGTAGCGATACGCTTATCAGGCCTTCGTGAACTCTGCAATATGTTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACGGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGt                                         <  4:13/268‑1 (MQ=38)                                                                                                                                                                                                                                     ccGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTg                                                                                                                                                                                                                                                <  1:106941/75‑1 (MQ=255)                                                                                                                                                                                                                                     ccGGGCTAG‑GCCCGGCATCAGGCTGATTAACAAACGCAAAACTGCCTGAGTGGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGt                                         <  2:194667/274‑1 (MQ=255)                                                                                                                                                                                                                                        caagttcatgcaattttaataagttgccagatatcctgtagGcc                                                                                                                                                                                                                                                                             <  7:305981‑M1/3‑1 (MQ=255)                                                                                                                                                                                                                                        caagttcatgcaattttaataagttgccagatatcctgtagGcc                                                                                                                                                                                                                                                                             >  8:305981‑M1/42‑44 (MQ=255)                                                                                                                                                                                                                                           tAT‑GCCAGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCt                                  <  1:130362/275‑1 (MQ=255)                                                                                                                                                                                                                                             t‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTg                                >  2:288820/1‑275 (MQ=255)                                                                                                                                                                                                                                               catgcaaattcaatatattgcagagttcacgtagGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCCCTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATACGCCACCGAGACGTTACTTCTCTCTAGCCAATTTTTCGCGCAACCCcattcaaaggtacccccgttcatttttg                                <  4:94870‑M1/240‑13 (MQ=255)                                                                                                                                                                                                                                                 gcaattttaataagttgccagatatcctgtagGCCTGa                                                                                                                                                                                                                                                                          <  7:237204‑M1/6‑1 (MQ=255)                                                                                                                                                                                                                                                 gcaattttaataagttgccagatatcctgtagGCCTGa                                                                                                                                                                                                                                                                          >  8:237204‑M1/33‑38 (MQ=255)                                                                                                                                                                                                                                                 ccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGccc                             <  2:443286/275‑1 (MQ=255)                                                                                                                                                                                                                                                 ccGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGAGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGccc                             <  2:441539/275‑1 (MQ=255)                                                                                                                                                                                                                                                          ggCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                                                                                   <  8:80417/116‑1 (MQ=255)                                                                                                                                                                                                                                                          ggCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCAt                                                                                                                                                                                   >  7:80417/1‑116 (MQ=255)                                                                                                                                                                                                                                                                  aaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATaa                                                                                                                                                                                                   >  6:533758/1‑92 (MQ=255)                                                                                                                                                                                                                                                                  aaCAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATaa                                                                                                                                                                                                   <  5:533758/92‑1 (MQ=255)                                                                                                                                                                                                                                                                      aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                                                                                                                                                                            >  6:331302/1‑47 (MQ=40)                                                                                                                                                                                                                                                                      aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAAct                                                                                                                                                                                                                                            <  5:331302/47‑1 (MQ=40)                                                                                                                                                                                                                                                                      aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCtttt                                                                                                                                                                                                                >  8:295033/1‑75 (MQ=255)                                                                                                                                                                                                                                                                      aaCGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCtttt                                                                                                                                                                                                                <  7:295033/75‑1 (MQ=255)                                                                                                                                                                                                                                                                            aaaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATATACATGTTCTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTAGCGCAACTCCATTAAAAGTTAGCCCAGTCGATTCTTGCCCTAACCATGACCACCGTcccccccgaaa  >  4:216364/1‑270 (MQ=38)                                                                                                                                                                                                                                                                             aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCtttt                                                                                                                                                                                                                >  7:905486/1‑68 (MQ=255)                                                                                                                                                                                                                                                                             aaCTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCtttt                                                                                                                                                                                                                <  8:905486/68‑1 (MQ=255)                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                              AAAGCCGAACCGATCCAGAACGGTCGCCAGCAACGTGGCGGCGGCGGTCGTGGGCAAGGTGGTGGTCGCGGTCAACAGCAACCACGCCGTGGGGAAGGTGGCGCAAAATCTGCAAGCGCGAAACCTGCAGAAAAACCGTCTCGCCGCCTCGGCGATGCCAAACCGGCAGGCGAACAACAACGTCGCCGCCGTCCGCGTAAACCTGCCGCTGCGCAGTAATCTTTTATGCCGGGCTAT‑GCCCGGCATCAGGCTGATGAACAAACGCAAAACTGCCTGATGCGCTACGCTTATCAGGCCTACGTGAACTCTGCAATATATTGAATTTGCATGCTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATTTCACAACAAGCACTTGTCAGCAATTTGAGAACACGGGAAAAAATTTATCTGTTTTACCGCCCATAAGCCACCGAGACGTTACTTCTCTATAGCCAATTGTTCGCGCAACTCCATTAAAAGGTAGCCCAGTCGATTCTTGCCCTTACCATGACCACCGTCTCCCCAGTAA  >  NC_000913/832018‑832558

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.