New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 3680367 =NA (NA)4 (0.030) 4/250 NT NA noncoding (1/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences
?NC_000913 3680397 = NA (NA)noncoding (31/76 nt) REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences REP265 (repetitive extragenic palindromic) element; contains 2 REP sequences

Only 100 of 219 total aligned reads displayed.

GTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAAGGA  >  NC_000913/3680124‑3680670
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                 
gtgtCCATGGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGAAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCt                                                                                                                                                                                                                                                                                   <  1:130780/274‑1 (MQ=255)
   tCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATCCCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCAt                                                                                                                                                                                                                                                                                <  2:50350/274‑1 (MQ=255)
       ttGCTGGCGGAGGGTGAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATa                                                                                                                                                                                                                                                                           <  1:59165/275‑1 (MQ=255)
       ttGCGGGCGAAGGGGTGGGGGCTGGTCCGGCGGTGAATCTGCCGAAAGAAATAGTGATTGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGAAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATa                                                                                                                                                                                                                                                                           <  1:160212/275‑1 (MQ=255)
                  gggTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGATGCGATGCCCGCGTAAACGCAGCATATGCACACGGCTGGATCAAGTGTTACCCCTCTAATCAGCTCATCCATAAATACCTGATg                                                                                                                                                                                                                                                                >  2:295267/1‑275 (MQ=255)
                              gTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCCCATCAAAAAATACCTTATGTTTGTTCTaaa                                                                                                                                                                                                                                                     >  4:503669/1‑273 (MQ=255)
                                       gggAAACTGCCGAAAGAAAAAGTGATCGATACCGCCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCa                                                                                                                                                                                                                                            <  1:116930/272‑1 (MQ=255)
                                           aaatGCCGAAAGAAAAAGGGAACGGAACCCCCGCAGCTGGGGACTCTTTCAGGGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAgg                                                                                                                                                                                                                                       <  4:291913/272‑1 (MQ=255)
                                                              gATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGGTTTACCCCTCTATCCAGCTTATCCATAACTACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGAAGGTGGaa                                                                                                                                                                                                                    >  2:30041/1‑275 (MQ=255)
                                                                 cGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCAt                                                                                                                                                                                                                                           >  2:450442/1‑249 (MQ=255)
                                                                         ccGCAGCTGGCGACTGTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGAGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCCTCAGGCATTACTGTTCAGGTGGAATATccttacc                                                                                                                                                                                                          >  1:53885/1‑269 (MQ=255)
                                                                          cGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGTAAGTACCGCTACTCAGTATCCAGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAATCGTTACCCCTCTACCCAGCCCACCCATAAACACCTGATGGTTGTGATAACTCTTCACCACCAGGCATTACAGTGTCGGTGGATTATCCGttcct                                                                                                                                                                                                         >  4:218503/1‑270 (MQ=255)
                                                                          cGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACtt                                                                                                                                                                                                        >  2:278258/1‑275 (MQ=255)
                                                                                                      gatcgtgggggaCGGCTGACAGGCGGCATCGCGGAAGACGGGGCGAAACGTGGGCCCCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGNGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTc                                                                                                                                                                                                            <  3:112469/232‑1 (MQ=255)
                                                                                                         cTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGCTTATCCCGCGTGAGGCGATGCCAACGTAAACGCAGCCTATGCAAATGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATACATACCTGATGGTTGCGCTAACTCATCACCATCAGTCCTTACTGTGCAGGAGGAATATCCGTCACTGCTGTATGTTCGTCATCCGTGGCcacacggct                                                                                                                                                                         >  4:84240/1‑270 (MQ=255)
                                                                                                                 aCGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                                                                                                                                                 <  2:80998/275‑1 (MQ=255)
                                                                                                                  cGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCTATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCCCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCCAACTCATCACCATCAGGCATTACTGTTAAGGTGGAATATCCGTCACTTCAGTATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAg                                                                                                                                                                 >  1:110767/1‑274 (MQ=255)
                                                                                                                                       gAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATaa                                                                                                                                                                                                                                                                          <  6:86701/148‑1 (MQ=255)
                                                                                                                                              cggcgAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTGATCCATAAATACCTg                                                                                                                                                                                                                                                                   >  6:328634/1‑148 (MQ=255)
                                                                                                                                                      cGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGt                                                                                                                                                                                                                                                              >  5:536038/1‑145 (MQ=255)
                                                                                                                                                           gCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTaa                                                                                                                                                                                                                                                      >  7:550759/1‑148 (MQ=255)
                                                                                                                                                                 gcccGGAAGTACGGTTTTTCAAGATCGCGGGGGAATTATCCCGGTGGAGGCGATGCCAGCGTAAACGGAGCCAATGGAAAAGGCTGGATAAAGGGTACCCCCTCGATCCGGCTGAACAATAAATTCCTGAGGGTTGTGCTAACTGATCAGCATCAGGCATTACTGTGCGGGTGGAATATCCGTCACGTCAGGGTGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCGATGATGTGAGCCCAGACCGACTGCAACGCtt                                                                                                                 <  4:183344/273‑1 (MQ=255)
                                                                                                                                                                 gACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtca                                                                                                                                                                                                                                                  <  6:260971/146‑1 (MQ=255)
                                                                                                                                                                   ccGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTc                                                                                                               <  4:270982/275‑1 (MQ=255)
                                                                                                                                                                              gTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCATCTATCCAGCTCATTCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATCACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTAATCCGTGGCGACAGAGGTCGTCGCAGCTGCGGTAGATGGGGCCATGATTAGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTc                                                                                                    >  2:379463/1‑275 (MQ=255)
                                                                                                                                                                               ttATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtca                                                                                                                                                                                                                                                  >  5:670439/1‑132 (MQ=255)
                                                                                                                                                                                       tATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTTATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGcc                                                                                           >  2:531738/1‑275 (MQ=255)
                                                                                                                                                                                         tCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtg                                                                                                                                                                                                                                                            <  5:252738/112‑1 (MQ=255)
                                                                                                                                                                                         tCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGt                                                                                                                                                                                                                        <  8:1024672/148‑1 (MQ=255)
                                                                                                                                                                                          cgcgGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATc                                                                                                                                                                                                                                          <  7:50256/129‑1 (MQ=255)
                                                                                                                                                                                              gcgcGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcat                                                                                                                                                                                                                                                 <  4:374286/118‑1 (MQ=255)
                                                                                                                                                                                               cgcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTaa                                                                                                                                                                                                                                                      >  6:578963/1‑112 (MQ=255)
                                                                                                                                                                                                gcgATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                                                                                                                                          <  4:242136/219‑1 (MQ=255)
                                                                                                                                                                                                      aTCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTgcagc                                                                              <  2:236922/273‑1 (MQ=255)
                                                                                                                                                                                                      aTCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTgcag                                                                               <  2:410249/272‑1 (MQ=255)
                                                                                                                                                                                                         ccGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCa                                                                                                                                                                                                                                            >  8:240709/1‑112 (MQ=255)
                                                                                                                                                                                                          cgcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTc                                                                                                                                                                                                       >  6:709731/1‑148 (MQ=255)
                                                                                                                                                                                                           gcgTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCa                                                                                                                                                                                                      <  5:813294/148‑1 (MQ=255)
                                                                                                                                                                                                                aGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGt                                                                                                                                                                                                                                                              <  8:109709/87‑1 (MQ=255)
                                                                                                                                                                                                                 ggCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAATTTCCGGCTCGCCTTTCGGCTGCAGCCGTATTAACGc                                                                   >  2:253277/1‑273 (MQ=255)
                                                                                                                                                                                                                   cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTaa                                                                                                                                                                                                                                                      >  6:371139/1‑92 (MQ=255)
                                                                                                                                                                                                                   cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTaa                                                                                                                                                                                                                                                      <  5:371139/92‑1 (MQ=255)
                                                                                                                                                                                                                   cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAata                                                                                                                                                                                                                  >  8:1098604/1‑128 (MQ=255)
                                                                                                                                                                                                                   cGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTAc                                                                                                                                                                                              >  5:481977/1‑148 (MQ=255)
                                                                                                                                                                                                                          aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGaa                                                                                                                                                                                                                    <  7:38687/119‑1 (MQ=255)
                                                                                                                                                                                                                          aGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACagag                                                                                                                                                                           <  2:266747/160‑1 (MQ=255)
                                                                                                                                                                                                                              tAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTAGTGTGCAGGt                                                                                                                                                                                                                        >  5:330375/1‑111 (MQ=255)
                                                                                                                                                                                                                              tAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTgg                                                                                                                                                                                   <  6:435630/148‑1 (MQ=255)
                                                                                                                                                                                                                               aaaCGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTc                                                                                                                                                                                                       >  6:786671/1‑127 (MQ=255)
                                                                                                                                                                                                                                   gcagcaTATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTtg                                                                                                                                                                                                                                                            >  8:194226/1‑70 (MQ=255)
                                                                                                                                                                                                                                        atatGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGt                                                                                                                                                                                     <  6:993818/136‑1 (MQ=255)
                                                                                                                                                                                                                                         tatGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCa                                                                                                                                                                                                                                            >  6:76311/1‑80 (MQ=255)
                                                                                                                                                                                                                                               aaaGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACt                                                                                                                                                                                                         <  8:569553/109‑1 (MQ=255)
                                                                                                                                                                                                                                               aaaGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACt                                                                                                                                                                                                         >  7:569553/1‑109 (MQ=255)
                                                                                                                                                                                                                                                 aGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTAc                                                                                                                                                                                                                                 >  5:218944/1‑83 (MQ=255)
                                                                                                                                                                                                                                                 aGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAgc                                                                                                                                                                >  7:251062/1‑148 (MQ=255)
                                                                                                                                                                                                                                                    ctggatagaggggtaacactttatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATc                                                                                                                                                                                                                <  8:482347‑M2/68‑1 (MQ=255)
                                                                                                                                                                                                                                                    CTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACaga                                                                                                                                                                            >  6:1011799‑M1/1‑133 (MQ=255)
                                                                                                                                                                                                                                                     TGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGt                                                                                                                                                                                                             <  8:86331‑M1/99‑1 (MQ=255)
                                                                                                                                                                                                                                                     TGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGt                                                                                                                                                                                                             >  7:86331‑M1/1‑99 (MQ=255)
                                                                                                                                                                                                                                                      GGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAggtgg                                                                                                                                                                       <  7:1098224‑M1/136‑1 (MQ=255)
                                                                                                                                                                                                                                                       GATAACGTGTTACCCCTCTATCCAGCTCATCCATACATACCTGATGGTTGTGCTAACCCATTCCCGTCAGGCATTCCTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCTCCTGCAACGCTTTCATGTTAACTTCCGGCTCGCCTTTCGGCTTCAGCAGTATTAACCCAATATACTTCAACAACTGTTGCCGCAGACCTTCATttacc                           <  4:422905‑M1/275‑3 (MQ=255)
                                                                                                                                                                                                                                                        atagaggggtaacactttatccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACtg                                                                                                                                                                                                                               >  7:1097030‑M2/26‑78 (MQ=255)
                                                                                                                                                                                                                                                        ATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTa                                                                                                                                                                                               >  8:756066‑M1/1‑110 (MQ=255)
                                                                                                                                                                                                                                                        ATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTa                                                                                                                                                                                               <  7:756066‑M1/110‑1 (MQ=255)
                                                                                                                                                                                                                                                        ATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAggtggt                                                                                                                                                                      >  5:298300‑M1/1‑135 (MQ=255)
                                                                                                                                                                                                                                                        ATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAgg                                                                                                                                                                          >  5:1013113‑M1/1‑131 (MQ=255)
                                                                                                                                                                                                                                                         TAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAg                                                                                                                                                        <  6:1073313‑M1/148‑1 (MQ=255)
                                                                                                                                                                                                                                                           aaGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATc                                                                                                                                                                                                                                          >  8:625872/1‑64 (MQ=255)
                                                                                                                                                                                                                                                           aaGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATc                                                                                                                                                                                                                                          <  7:625872/64‑1 (MQ=255)
                                                                                                                                                                                                                                                             gtgtTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTa                                                                                                                                                                                               <  8:106513/105‑1 (MQ=255)
                                                                                                                                                                                                                                                             gtgtTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATgg                                                                                                                                                    <  7:1025123/148‑1 (MQ=255)
                                                                                                                                                                                                                                                              tgtTACCCCTCTATCCAGCTCATCCTTAAATGCCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAGTATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCGGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACAtctc                      <  2:218504/273‑1 (MQ=255)
                                                                                                                                                                                                                                                                  aCCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATgg                                                                                                                                                    <  5:782444/143‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcat                                                                                                                                                                                                                                                 <  8:362038/47‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATc                                                                                                                                                                                                                >  6:402856/1‑80 (MQ=255)
                                                                                                                                                                                                                                                                     ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATc                                                                                                                                                                                                                <  5:402856/80‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATg                                                                                                                                                                                                 <  8:722816/95‑1 (MQ=255)
                                                                                                                                                                                                                                                                     ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATg                                                                                                                                                                                                 >  7:722816/1‑95 (MQ=255)
                                                                                                                                                                                                                                                                     ccTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACaga                                                                                                                                                                            <  7:1099414/116‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tctATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATGAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCa                                                                                                                                                                                                      <  5:920004/88‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tctATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCa                                                                                                                                                                                                      <  7:232996/88‑1 (MQ=255)
                                                                                                                                                                                                                                                                       tctATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                                                                                                                                          >  6:186682/1‑148 (MQ=255)
                                                                                                                                                                                                                                                                        ctATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACtcatc                                                                                                                                                                                                                                                >  2:470107/1‑45 (MQ=255)
                                                                                                                                                                                                                                                                          atccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGCTGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCACGTTCAATTCCGGCTCGCCTTTCGGCTTCAGCCGTATTAACGCCATCTCATTCGACAACTCTTGCCGCAGATCCTGATTTAACATCTCTACCGTCCGGctt         >  2:490757‑M2/8‑273 (MQ=255)
                                                                                                                                                                                                                                                                          atccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCa                                                                                                                                               <  8:315960‑M2/133‑1 (MQ=255)
                                                                                                                                                                                                                                                                           tccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACagag                                                                                                                                                                           <  8:549669‑M2/105‑1 (MQ=255)
                                                                                                                                                                                                                                                                            ccagcTCATCCATAAATACCTGATGGTTGTGCTAGCTCAACACCATCAGGCATTACTGTGCAGGTGGAATATCCGGCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTGGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCATTTCGGCTgcagc                                                                              <  2:203508‑M2/198‑1 (MQ=255)
                                                                                                                                                                                                                                                                            ccagcTCATCCATAAATACCTGATGGTTGTGCTAACtcat                                                                                                                                                                                                                                                 <  6:228654‑M2/35‑1 (MQ=255)
                                                                                                                                                                                                                                                                            ccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCa                                                                                                                                                                                                                                            <  4:470106‑M2/40‑1 (MQ=255)
                                                                                                                                                                                                                                                                            ccagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGAtt                                                                                                                                          >  6:522445‑M2/6‑143 (MQ=255)
                                                                                                                                                                                                                                                                             cagcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATgg                                                                                                                                                    >  6:826321‑M2/5‑132 (MQ=255)
                                                                                                                                                                                                                                                                               gcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAgcggc                                                                                                                                                             <  5:829635‑M2/119‑1 (MQ=255)
                                                                                                                                                                                                                                                                               gcTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGAt                                                                                                                                      <  7:353147‑M2/142‑1 (MQ=255)
                                                                                                                                                                                                                                                                                cTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAg                                                                                                                                 >  5:586614‑M2/2‑148 (MQ=255)
                                                                                                                                                                                                                                                                                cTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTCACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAAGGa  >  2:313767‑M2/2‑275 (MQ=255)
                                                                                                                                                                                                                                                                                cTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCCGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCCGCACCTGATTTAACCTCTCTACCGTCAGCCTATTTaggt  >  2:148614‑M2/2‑274 (MQ=255)
                                                                                                                                                                                                                                                                                cTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCACTGATTTGATCCCAGACGGCCTGCAACGATGTCATGTTAAATTCCGGTTCGCCTTTCGGTTGCCGCAGCATTAACGCCATCTCATTGCACACCTGTGGACGCAGATCTGGATTTGAAATCTCGACAGTACGGCtattagaga  >  4:117920‑M2/2‑271 (MQ=255)
                                                                                                                                                                                                                                                                                 tCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTgg                                                                                                                                                                                                                      >  5:653673/1‑62 (MQ=255)
                                                                                                                                                                                                                                                                                 tCATCCATAAACACCTGATGGTTGTGCTAACTCATCACCTTCAGGCATTACTGTGCAGGTgg                                                                                                                                                                                                                      <  6:653673/62‑1 (MQ=255)
                                                                                                                                                                                                                                                                                 |                                                                                                                                                                                                                                                                                 
GTGTCCATTGCTGGCGAAGGGTTAGTGGATGTTCCGGCGGTGAAACTGCCGAAAGAAAAAGTGATCGATACCACCGCAGCTGGCGACTCTTTCAGTGCCGGTTATCTGGCGGTACGTCTGACAGGCGGCAGCGCGGAAGACGCGGCGAAACGTGGGCACCTGACCGCAAGTACCGTTATTCAGTATCGCGGCGCGATTATCCCGCGTGAGGCGATGCCAGCGTAAACGCAGCATATGCAAAAGGCTGGATAAAGTGTTACCCCTCTATCCAGCTCATCCATAAATACCTGATGGTTGTGCTAACTCATCACCATCAGGCATTACTGTGCAGGTGGAATATCCGTCACTTCAGGATGTACGTCATCCGTGGCGACAGAGGTGGTCGCAGCGGCGGTAGATGGGGCCATGATTTGATCCCAGACCGCCTGCAACGCTTTCATGTTAAATTCCGGCTCGCCTTTCGGCTGCAGCAGTATTAACGCCATATCATTCGACAACTGTTGACGCAGATCCTGATTTAACATCTCTACCGTCAGGCTATTAAGGA  >  NC_000913/3680124‑3680670

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.