Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC NC_000913 1,978,503 Δ776 bp 100% insB1insA insB1, insA

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913 1978503–1979270 1979278 9–776 81 [0] [0] 81 insB1–insA insB1,insA

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913 = 19785020 (0.000)70 (0.470) 48/250 NT 100% intergenic (‑305/+16) flhD/insB1 flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
?NC_000913 1979279 = 0 (0.000)intergenic (‑64/‑474) insA/uspC IS1 repressor TnpA/universal stress protein

ATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCA  >  NC_000913/1978253‑1978743
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                 
aTGTTGCCGGGAAGCCCCGGTAAAAAAAAATTAGGATTAGAATAGTTGGGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                                                                                                                                                                          <  4:3294‑M1/275‑26 (MQ=255)
                                                                                                         aaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                                                                                                                                 <  6:578834‑M1/147‑3 (MQ=255)
                                                                                                         aaTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                                                                                                                                                                 >  5:578834‑M1/1‑145 (MQ=255)
                                                                                                          aTGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTATACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                                                                                                                                                               <  7:525468‑M1/148‑5 (MQ=255)
                                                                                                                         tATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtt                                                                                                                                                                                                                                >  5:865021‑M1/1‑129 (MQ=255)
                                                                                                                               aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                              >  6:533573‑M1/1‑123 (MQ=255)
                                                                                                                               aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtttt                                                                                                                                                                                                                              <  5:533573‑M1/144‑22 (MQ=255)
                                                                                                                               aGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgtattgggt                                                                                                                                                                                                                          >  7:745211‑M1/1‑123 (MQ=255)
                                                                                                                                            aTCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                                                                                                                                                                             <  6:865021‑M1/148‑39 (MQ=255)
                                                                                                                                                           cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                                                                                                                                                                   >  3:138104‑M1/1‑95 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                                                                                                                          >  6:818913‑M1/1‑93 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtta                                                                                                                                                                                                          <  5:818913‑M1/134‑42 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                                                                                                                                 >  8:1108308‑M1/1‑93 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                                                                                                                                 <  7:1108308‑M1/127‑35 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                                                                                                                               >  5:262190‑M1/1‑93 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttt                                                                                                                                                                                                                               <  6:262190‑M1/113‑21 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                                                                                                                    >  6:637510‑M1/1‑93 (MQ=255)
                                                                                                                                                             cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                                                                                                                    <  5:637510‑M1/108‑16 (MQ=255)
                                                                                                                                                               tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagca                                                                                                                                                                               <  1:138104‑M1/159‑69 (MQ=255)
                                                                                                                                                               tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                                                                                                                        >  5:251107‑M1/1‑91 (MQ=255)
                                                                                                                                                               tCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                                                                                                                        <  6:251107‑M1/102‑12 (MQ=255)
                                                                                                                                                                    acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                                                                                                                                <  8:527910‑M1/137‑52 (MQ=255)
                                                                                                                                                                    acacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttttt                                                                                                                                                                                                >  7:527910‑M1/1‑86 (MQ=255)
                                                                                                                                                                       cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                                                                                                                  >  6:117127‑M1/1‑83 (MQ=255)
                                                                                                                                                                       cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                                                                                                                                                                  <  5:117127‑M1/100‑18 (MQ=255)
                                                                                                                                                                              aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaa                                                                                                                                                                           <  8:745211‑M1/148‑73 (MQ=255)
                                                                                                                                                                              aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                                                                                                                                 >  7:1065343‑M1/1‑76 (MQ=255)
                                                                                                                                                                              aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                                                                                                                                                                 <  8:1065343‑M1/110‑35 (MQ=255)
                                                                                                                                                                                 aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                                                                                                                        >  6:29547‑M1/1‑73 (MQ=255)
                                                                                                                                                                                 aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                                                                                                                                                                        <  5:29547‑M1/132‑60 (MQ=255)
                                                                                                                                                                                 aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                                                                                                                             >  8:756810‑M1/1‑73 (MQ=255)
                                                                                                                                                                                 aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACGTAACATAAATGtataagtcatacttttgttttg                                                                                                                                                                                                                             <  7:756810‑M1/95‑23 (MQ=255)
                                                                                                                                                                                  cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                                                                                                                    <  8:95218‑M1/87‑16 (MQ=255)
                                                                                                                                                                                  cGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                                                                                                                                                                    >  7:95218‑M1/1‑72 (MQ=255)
                                                                                                                                                                                    gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcactctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                                                                                                                            <  7:949621‑M1/141‑72 (MQ=255)
                                                                                                                                                                                    gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                                                                                                                            >  8:949621‑M1/1‑70 (MQ=255)
                                                                                                                                                                                    gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                                                                                                                                 <  8:747796‑M1/88‑19 (MQ=255)
                                                                                                                                                                                    gAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgt                                                                                                                                                                                                                                 >  7:747796‑M1/1‑70 (MQ=255)
                                                                                                                                                                                        ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                                                                                                                        >  7:1130001‑M1/1‑66 (MQ=255)
                                                                                                                                                                                        ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                                                                                                                                                                        <  8:1130001‑M1/77‑12 (MQ=255)
                                                                                                                                                                                         gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                                                                                                                    >  5:1004944‑M1/1‑65 (MQ=255)
                                                                                                                                                                                         gggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaaca                                                                                                                                                                    <  6:1004944‑M1/144‑80 (MQ=255)
                                                                                                                                                                                             tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                                                                                                                                                                                                  >  5:4093‑M1/1‑61 (MQ=255)
                                                                                                                                                                                             tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGt                                                                                                                                                                                                                                                  <  6:4093‑M1/62‑2 (MQ=255)
                                                                                                                                                                                              gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                                                                                                             >  6:354976‑M1/1‑60 (MQ=255)
                                                                                                                                                                                              gCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACGTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                                                                                                             <  5:354976‑M1/146‑87 (MQ=255)
                                                                                                                                                                                                        ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                                                                                                                                                                             <  8:476162‑M1/88‑39 (MQ=255)
                                                                                                                                                                                                        ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                                                                                                                                                                             >  7:476162‑M1/1‑50 (MQ=255)
                                                                                                                                                                                                         taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                 <  7:888314‑M1/99‑51 (MQ=255)
                                                                                                                                                                                                         taatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                 >  8:888314‑M1/1‑49 (MQ=255)
                                                                                                                                                                                                          aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                                                                                                             <  6:1108612‑M1/134‑87 (MQ=255)
                                                                                                                                                                                                          aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                                                                                                             >  5:1108612‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                          aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                                                                                                                               >  7:732180‑M1/1‑48 (MQ=255)
                                                                                                                                                                                                          aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                                                                                                                                                               <  8:732180‑M1/84‑37 (MQ=255)
                                                                                                                                                                                                           atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                 >  5:863534‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                           atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                 <  6:863534‑M1/97‑51 (MQ=255)
                                                                                                                                                                                                           atGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                                                                                                                             <  8:653266‑M1/69‑23 (MQ=255)
                                                                                                                                                                                                           atGCGTGATGAAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                                                                                                                                                                             >  7:653266‑M1/1‑47 (MQ=255)
                                                                                                                                                                                                                        aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaccaggaataatcgaaatgggatgttgcgcacagtaaaaataactcaccgaaaataatcatcggctataaataatcactttcaagcaaaaccagataagctatttttaaacagacacttcccgcacaacaaacaaataaactaacaagtaaggccaacatcaattt  >  4:302386‑M1/1‑34 (MQ=255)
                                                                                                                                                                                                                              caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataact                                                                                                                           >  8:1042916‑M1/1‑28 (MQ=255)
                                                                                                                                                                                                                              caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                                                                                                                                  >  7:183266‑M1/1‑28 (MQ=255)
                                                                                                                                                                                                                              caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagg                                                                                                                                                                  <  8:183266‑M1/109‑82 (MQ=255)
                                                                                                                                                                                                                               aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactc                                                                                                                          <  7:1042916‑M1/148‑122 (MQ=255)
                                                                                                                                                                                                                                   cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                                                                                                             >  6:310632‑M1/1‑23 (MQ=255)
                                                                                                                                                                                                                                   cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataa                                                                                                                                                             <  5:310632‑M1/109‑87 (MQ=255)
                                                                                                                                                                                                                                     cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                                                                                                                                 >  5:479763‑M1/1‑21 (MQ=255)
                                                                                                                                                                                                                                     cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaa                                                                                                                                 <  6:479763‑M1/135‑115 (MQ=255)
                                                                                                                                                                                                                                     cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                                                                                                                            <  8:303972‑M1/92‑72 (MQ=255)
                                                                                                                                                                                                                                     cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                                                                                                                                                                            >  7:303972‑M1/1‑21 (MQ=255)
                                                                                                                                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                                                                                                                     >  8:34794‑M1/1‑17 (MQ=255)
                                                                                                                                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg                                                                                                                                                     <  7:34794‑M1/111‑95 (MQ=255)
                                                                                                                                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                                                                                                                            >  8:239573‑M1/1‑17 (MQ=255)
                                                                                                                                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgct                                                                                                                                                                                            <  7:239573‑M1/72‑56 (MQ=255)
                                                                                                                                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                 >  8:323847‑M1/1‑17 (MQ=255)
                                                                                                                                                                                                                                         aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                                                                                                                                                                 <  7:323847‑M1/67‑51 (MQ=255)
                                                                                                                                                                                                                                              ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                                                                                                                       <  7:1128897‑M1/88‑77 (MQ=255)
                                                                                                                                                                                                                                              ttAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                                                                                                                                                                       >  8:1128897‑M1/1‑12 (MQ=255)
                                                                                                                                                                                                                                                    tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcaca                                                                                                                                       <  7:211376‑M1/114‑109 (MQ=255)
                                                                                                                                                                                                                                                    tAAATGtataagtcatacttttggtttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatagaaatgggatgttgcgcaca                                                                                                                                       >  8:211376‑M1/1‑6 (MQ=255)
                                                                                                                                                                                                                                                     aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta                                                                                                     >  8:127688‑M1/1‑5 (MQ=255)
                                                                                                                                                                                                                                                     aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatgttgcgcacagtcaaaataactcaccgtaaataatcatctgcta                                                                                                     <  7:127688‑M1/147‑143 (MQ=255)
                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                 
ATGTCGCCGGGAAGCCCCGGTAAAAAATAATTAGCATTAGAATAGTTGCGATAAGCTGCAATAAGCAGAACCACCTTTTTGGTTTAATATGTCCTTACAAATAGAAATGGGTCTTTACACTTATCTAAGATTTTTCCTAAATCGACGCAACTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTCAATTCGCTGCGTATATCGCTTGCTGATTACGTGCAGCTTTCCCTTCAGGCGGGATTCATACAGCGGCCAGCCATCCGTCATCCATATCACCACGTCA  >  NC_000913/1978253‑1978743

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: