Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,423,622 C→T 6.6% noncoding (34/76 nt) thrV ← tRNA‑Thr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,423,6220CT 6.6% 623.2 / 23.4 193noncoding (34/76 nt)thrVtRNA‑Thr
Reads supporting (aligned to +/- strand):  ref base C (93/87);  new base T (7/6);  total (100/93)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.23e-01

Only 100 of 195 total aligned reads displayed.

GGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCA  >  NC_000913/3423350‑3423893
                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                               
ggAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCa                                                                                                                                                                                                                                                                                <  2:345908/274‑1 (MQ=255)
                     aacaGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAg                                                                                                                                                                                                                                                          <  4:142274/275‑1 (MQ=255)
                               aCAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAAc                                                                                                                                                                                                                                                              >  4:125905/1‑261 (MQ=255)
                                   aaGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAg                                                                                                                                                                                                                                                          <  2:125906/261‑1 (MQ=255)
                                                 cGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTTCCGCCAGACAACTTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTTATGcc                                                                                                                                                                                                                               >  2:271001/1‑274 (MQ=255)
                                                     tGAGCCTTTTGTTTTATTTGATGTCGGGCAGTCCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTgg                                                                                                                                                                                                                            <  2:507445/273‑1 (MQ=255)
                                                     tGAGACTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTgg                                                                                                                                                                                                                            <  2:451730/273‑1 (MQ=255)
                                                      gAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTATTCTGCCGAACTTTAACCTAAAAATTGTTGCTGATACCCTGAGTCTCACTGCGGATCTCACACTTCCCATGCGTCCTCTCTACCAACTGAGCCATATCACCACGCTCAATTTGCTGCCTGGCa                                                                                                                                                                                                                          >  2:539557/1‑274 (MQ=21)
                                                               gTTTTATTTGTGGTCTGGGAGTTCCCTACTCTCGCGTCAGGAGCCCCCACACTACCCTCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATTGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCTAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACCGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTAct                                                                                                                                                                                                                <  4:152893/275‑1 (MQ=37)
                                                                           gTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACATTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGga                                                                                                                                                                                                    <  2:33033/275‑1 (MQ=255)
                                                                                              tcGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCTAACTTTAACATAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACACTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTCCCCTCGCTGGGGGCGACCCCACCCTACCATct                                                                                                                                                                                  >  2:571516/1‑273 (MQ=37)
                                                                                                          aCCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGAt                                                                                                                                                                                                                                  >  2:379061/1‑214 (MQ=255)
                                                                                                           ccccACACGACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTTCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCGCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGttt                                                                                                                                                                    <  1:145478/275‑1 (MQ=255)
                                                                                                                cacTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAggg                                                                                                                                                                                                                                                                            >  3:136186/1‑166 (MQ=255)
                                                                                                                                           cTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGCCCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTggg                                                                                                                                     >  2:163369/1‑274 (MQ=255)
                                                                                                                                             tCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTAcc                                                                                                                                                                                                                                                                 >  5:1067552/1‑148 (MQ=255)
                                                                                                                                             tCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTAc                                                                                                                                                                                                                                                                  <  7:624198/147‑1 (MQ=255)
                                                                                                                                             tCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTAc                                                                                                                                                                                                                                                                  >  8:624198/1‑147 (MQ=255)
                                                                                                                                               tGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTgc                                                                                                                                                                                                                                                                         <  7:182937/138‑1 (MQ=255)
                                                                                                                                               tGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTgc                                                                                                                                                                                                                                                                         >  8:182937/1‑138 (MQ=255)
                                                                                                                                                 aGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATCTGATGCCTGGCAGTTCCCTACTCTCGCATGGTGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTTATTTCGTCATTGGGTCAGGTGGGaccacc                                                                                                                               >  2:7440/1‑274 (MQ=255)
                                                                                                                                                    tCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAg                                                                                                                                                                                                                                                          >  8:756274/1‑148 (MQ=255)
                                                                                                                                                    tCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAg                                                                                                                                                                                                                                                          >  7:532479/1‑148 (MQ=255)
                                                                                                                                                        cATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTACATAGTGGTTCTAACACCTATCGTCGAACTGGGTACCTCACCCTTACCAAGGGATCGCTCTACCAACTGAGCCATACCAGCCCTCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAAACCCCACACTACCCTCGGCGCTACGGCGTTTCACTTTAGACTTCGGCCTGGGGACAGGGGGgccacccgctcatc                                                                                                                       >  4:381878/1‑266 (MQ=25)
                                                                                                                                                                  ggTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGctc                                                                                                                                                                                                                                                                     <  6:93661/123‑1 (MQ=255)
                                                                                                                                                                    tGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTg                                                                                                                                                                                                                                                            <  7:583191/130‑1 (MQ=255)
                                                                                                                                                                     gggACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaa                                                                                                                                                                                                                                         <  6:1067552/148‑1 (MQ=255)
                                                                                                                                                                      ggACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTAct                                                                                                                                                                                                                <  1:10670/172‑1 (MQ=255)
                                                                                                                                                                        accaccGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAg                                                                                                                                                                                                                                                                              <  7:316339/108‑1 (MQ=255)
                                                                                                                                                                        accaccGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAAtt                                                                                                                                                                                                                                      >  5:929084/1‑148 (MQ=255)
                                                                                                                                                                         ccaccGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCatat                                                                                                                                                                                                                                                    <  6:1038937/133‑1 (MQ=255)
                                                                                                                                                                             cgcgCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCata                                                                                                                                                                                                                                                     >  2:1497/1‑128 (MQ=255)
                                                                                                                                                                             cgcgCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACCGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCCGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGCGTTCGGCATGGGTTCATGTGGGCCCACCGCGCTCCGCCCCGCAGGCACATTCTtttt                                                                                                  >  4:164111/1‑275 (MQ=37)
                                                                                                                                                                                 cTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTg                                                                                                                                                                                                                             <  7:756274/148‑1 (MQ=255)
                                                                                                                                                                                          ccAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTGGTAAGGGTga                                                                                                                                                                                                                                                                         >  8:318362/1‑94 (MQ=255)
                                                                                                                                                                                                 aaTTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTGGTAAGGGTg                                                                                                                                                                                                                                                                          >  5:1010688/1‑87 (MQ=255)
                                                                                                                                                                                                       tttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTGGTAAGGGTgag                                                                                                                                                                                                                                                                        >  6:496717/1‑81 (MQ=255)
                                                                                                                                                                                                       tttCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTTCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTATCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTGCGGTATGGGGTACGGTGGGACCACAGCGCAAAGGCCGCCAGGAAAATGCTGTTTTATCGAACCGCATCTGCGTTCTGAtt                                                                        >  1:111971/1‑275 (MQ=25)
                                                                                                                                                                                                            aaTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTGGTAAGGGTga                                                                                                                                                                                                                                                                         >  8:575631/1‑76 (MQ=255)
                                                                                                                                                                                                            aaTCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGct                                                                                                                                                                                                                                                                      <  7:56427/80‑1 (MQ=255)
                                                                                                                                                                                                              tCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAg                                                                                                                                                                                                                                                                              >  5:620318/1‑70 (MQ=255)
                                                                                                                                                                                                                   cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCata                                                                                                                                                                                                                                                     <  7:908616/90‑1 (MQ=255)
                                                                                                                                                                                                                   cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCata                                                                                                                                                                                                                                                     >  8:908616/1‑90 (MQ=255)
                                                                                                                                                                                                                   cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaaa                                                                                                                                                                                                                                        <  8:850069/103‑1 (MQ=255)
                                                                                                                                                                                                                   cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTaaa                                                                                                                                                                                                                                        >  7:850069/1‑103 (MQ=255)
                                                                                                                                                                                                                   cGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAg                                                                                                                                                                                                                         >  6:140422/1‑118 (MQ=255)
                                                                                                                                                                                                                         ttAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcccc                                                                                                                                                                                              >  8:1058205/1‑139 (MQ=255)
                                                                                                                                                                                                                               tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTa                                                                                                                                                                                                                                                                   <  6:389784/64‑1 (MQ=255)
                                                                                                                                                                                                                               tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTa                                                                                                                                                                                                                                                                   >  5:389784/1‑64 (MQ=255)
                                                                                                                                                                                                                               tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGgaga                                                                                                                                                                                                  >  6:491244/1‑129 (MQ=255)
                                                                                                                                                                                                                               tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGgaga                                                                                                                                                                                                  <  5:491244/129‑1 (MQ=255)
                                                                                                                                                                                                                               tAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc                                                                                                                                                                                                <  7:1073196/131‑1 (MQ=255)
                                                                                                                                                                                                                                aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAggg                                                                                                                                                                                                                                                                            >  7:52082/1‑54 (MQ=255)
                                                                                                                                                                                                                                aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTg                                                                                                                                                                                                                                                            <  8:529765/70‑1 (MQ=255)
                                                                                                                                                                                                                                aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGc                                                                                                                                                                                                           >  5:889084/1‑119 (MQ=255)
                                                                                                                                                                                                                                aaaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACt                                                                                                                                                                                         <  5:1129041/137‑1 (MQ=255)
                                                                                                                                                                                                                                 aaaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAAtcttc                                              >  2:298057/1‑275 (MQ=255)
                                                                                                                                                                                                                                  aaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcccc                                                                                                                                                                                              >  5:35304/1‑130 (MQ=255)
                                                                                                                                                                                                                                  aaaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcccc                                                                                                                                                                                              <  6:35304/130‑1 (MQ=255)
                                                                                                                                                                                                                                   aaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCt                                                                                                                                                                                                                   <  6:231378/108‑1 (MQ=255)
                                                                                                                                                                                                                                   aaGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCt                                                                                                                                                                                                                   >  5:231378/1‑108 (MQ=255)
                                                                                                                                                                                                                                     gtggtgCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTgcg                                                                                                                                                                                                                                                                        <  4:539668/53‑1 (MQ=255)
                                                                                                                                                                                                                                         tgCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCaa                                                                                                                                                                                                                                                               <  8:499092/58‑1 (MQ=255)
                                                                                                                                                                                                                                           cTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAACACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCg                                     >  2:94400/1‑274 (MQ=255)
                                                                                                                                                                                                                                             gATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGc                                                                                                                                                                                                                                >  5:853856/1‑85 (MQ=255)
                                                                                                                                                                                                                                             gATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCg                                                                                                                                                                       >  7:405414/1‑142 (MQ=255)
                                                                                                                                                                                                                                             gATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCg                                                                                                                                                                       <  8:405414/142‑1 (MQ=255)
                                                                                                                                                                                                                                                aCCCAGAGTCGAACTGGGGACCTCACCCTTAACAAGGTTGCGCTCTACCAACTTAGACATATCCGCACGCTAACTTTGATGCCTGGCAGTTCCCTAGTCTCGCATGGGGCGACCCCACACTACCATCGGCGCTACGGCGTTTCCCTTCTGATTTCGGCTTCGGGGCAGGTGGGCCCCCGCCTCTATGGCCACCAGGCACATTATTTTTTCTCAGACCGCTTCGGCGTCTCGATTTATGCTGTTACAGGCTGACACTTTTATCCCATCCCCCaaaa                               >  4:477686/1‑275 (MQ=12)
                                                                                                                                                                                                                                                 cccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCt                                                                                                                                                             >  6:1120355/1‑148 (MQ=255)
                                                                                                                                                                                                                                                  ccAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTc                                                                                                                                                              >  6:926115/1‑146 (MQ=255)
                                                                                                                                                                                                                                                   cAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcccc                                                                                                                                                                                              <  7:1131807/113‑1 (MQ=255)
                                                                                                                                                                                                                                                    agagTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGt                                                                                                                                                                      >  8:30349/1‑136 (MQ=255)
                                                                                                                                                                                                                                                    agagTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGt                                                                                                                                                                      <  7:30349/136‑1 (MQ=255)
                                                                                                                                                                                                                                                     gagTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCa                                                                                                                                                                  <  8:140165/139‑1 (MQ=255)
                                                                                                                                                                                                                                                           aaCTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGt                                                                                                                                                         >  6:858748/1‑142 (MQ=255)
                                                                                                                                                                                                                                                               ggggACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTccc                                                                                                                                                                                                                    <  5:305085/79‑1 (MQ=255)
                                                                                                                                                                                                                                                               ggggACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTccc                                                                                                                                                                                                                    >  6:305085/1‑79 (MQ=255)
                                                                                                                                                                                                                                                               cgggACCTAACCCTTACCAAGGGTACAGTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTGCCCTACTCTCGCATGTGGAGACCCCCCACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGGTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGt                <  4:298056/274‑1 (MQ=255)
                                                                                                                                                                                                                                                                 ggACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCg                                                                                                                                                                       <  8:1101791/122‑1 (MQ=255)
                                                                                                                                                                                                                                                                   aCCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTc                                                                                                                                                              >  5:720471/1‑129 (MQ=255)
                                                                                                                                                                                                                                                                      tCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCa                                                                                                                                                                                     <  8:727501/103‑1 (MQ=255)
                                                                                                                                                                                                                                                                      tCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCa                                                                                                                                                                                     >  7:727501/1‑103 (MQ=255)
                                                                                                                                                                                                                                                                      tCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGt                                                                                                                                        >  7:1024140/1‑148 (MQ=255)
                                                                                                                                                                                                                                                                      tCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGt                                                                                                                                        >  6:716758/1‑148 (MQ=255)
                                                                                                                                                                                                                                                                       cACCCTTGGTAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTccc                                                                                                                                                                                                                    >  6:627424/1‑71 (MQ=25)
                                                                                                                                                                                                                                                                       cACCCTTGGTAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTccc                                                                                                                                                                                                                    <  7:941496/71‑1 (MQ=25)
                                                                                                                                                                                                                                                                       cACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc                                                                                                                                                                                                <  8:377857/91‑1 (MQ=255)
                                                                                                                                                                                                                                                                       cACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc                                                                                                                                                                                                >  7:377857/1‑91 (MQ=255)
                                                                                                                                                                                                                                                                       cACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAg                                                                                                                                          <  6:812190/145‑1 (MQ=255)
                                                                                                                                                                                                                                                                       cACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTg                                                                                                                                       <  8:553587/148‑1 (MQ=255)
                                                                                                                                                                                                                                                                          ccTTACCAAGGGTGCGCTCTACCAACTGCGCCATATCAGCCCGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGa                                                                                                                                    >  8:585000/1‑148 (MQ=255)
                                                                                                                                                                                                                                                                           cTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTg                                                                                                                                                                                                                                    <  8:448989/51‑1 (MQ=255)
                                                                                                                                                                                                                                                                           cTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTg                                                                                                                                                                                                                                    >  7:448989/1‑51 (MQ=255)
                                                                                                                                                                                                                                                                           cTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTg                                                                                                                                                            >  5:93662/1‑123 (MQ=255)
                                                                                                                                                                                                                                                                           cTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGtt                                                                                                                                                        >  7:611280/1‑127 (MQ=255)
                                                                                                                                                                                                                                                                           cTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGtt                                                                                                                                                        <  8:611280/127‑1 (MQ=255)
                                                                                                                                                                                                                                                                             tACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc                                                                                                                                                                                                >  8:465898/1‑85 (MQ=255)
                                                                                                                                                                                                                                                                             tACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGAcc                                                                                                                                                                                                <  7:465898/85‑1 (MQ=255)
                                                                                                                                                                                                                                                                                cAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGtt                                                                                                                                                        >  8:821112/1‑122 (MQ=255)
                                                                                                                                                                                                                                                                                cAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGtt                                                                                                                                                        <  7:821112/122‑1 (MQ=255)
                                                                                                                                                                                                                                                                                |                                                                                                                                                                                                                                                                               
GGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACTGCCGCCAGACAAATTCTTTTCTAATCTGCCGAACTTTAACCTAAAAAGTGGTGCTGATACCCAGAGTCGAACTGGGGACCTCACCCTTACCAAGGGTGCGCTCTACCAACTGAGCCATATCAGCACGCTAAATTTGATGCCTGGCAGTTCCCTACTCTCGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTACGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACAGCTTCGGCGTTGTAAGGTTAAGCCTCA  >  NC_000913/3423350‑3423893

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: