Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,798,234 A→T 20.5% intergenic (+27/+5) waaL → / ← waaU O‑antigen ligase/lipopolysaccharide core biosynthesis

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,798,2340AT20.5% 166.8 / 38.1 68intergenic (+27/+5)waaL/waaUO‑antigen ligase/lipopolysaccharide core biosynthesis
Reads supporting (aligned to +/- strand):  ref base A (29/25);  new base T (7/7);  total (36/32)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.08e-01

TTTCACTATTTTATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCG  >  NC_000913/3798029‑3798434
                                                                                                                                                                                                             |                                                                                                                                                                                                        
tttCACTATTTTATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATTCGCTATAGTCCNCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTNATTATAAAACTTAATCTCTTTACTGNATTAGTTAAAGTTTAAGTAACTATAtttt                                                                                                                                     >  3:90096/1‑275 (MQ=255)
                  cATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgggg                                                                                                                   >  2:439310/1‑275 (MQ=255)
                                                                                       tgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCAct                                                                                                                                                                                                 >  5:303346/1‑128 (MQ=255)
                                                                                       tgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCAct                                                                                                                                                                                                 <  6:303346/128‑1 (MQ=255)
                                                                                                 ggCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAggg                                      <  4:439309/273‑1 (MQ=255)
                                                                                                   cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTaaa                                  >  2:178457/1‑275 (MQ=255)
                                                                                                         gcaTTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                                                                                                                        >  8:166481/1‑103 (MQ=255)
                                                                                                         gcaTTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                                                                                                                        <  7:166481/103‑1 (MQ=255)
                                                                                                                 aTTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                                                                                                                        >  6:816891/1‑95 (MQ=255)
                                                                                                                 aTTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                                                                                                                        <  5:816891/95‑1 (MQ=255)
                                                                                                                        ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                                                                                                                                                >  7:870564/1‑96 (MQ=255)
                                                                                                                        ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActt                                                                                                                                                                                                <  8:870564/96‑1 (MQ=255)
                                                                                                                         tataTCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCa                                                                                                                                                                                                   <  8:344223/92‑1 (MQ=255)
                                                                                                                         tataTCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTTTAACTCa                                                                                                                                                                                                   >  7:344223/1‑92 (MQ=255)
                                                                                                                                   ataGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTTTGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCg  >  4:139488/1‑275 (MQ=255)
                                                                                                                                        ccTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                                                                                                                        >  5:551601/1‑72 (MQ=255)
                                                                                                                                        ccTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaa                                                                                                                                                                                                        <  6:551601/72‑1 (MQ=255)
                                                                                                                                           ctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCa                                                                                                                                                                                                   <  8:620309/74‑1 (MQ=255)
                                                                                                                                           ctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCa                                                                                                                                                                                                   >  7:620309/1‑74 (MQ=255)
                                                                                                                                           ctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCt                                                                                                                                                                                         >  6:645950/1‑84 (MQ=255)
                                                                                                                                           ctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCt                                                                                                                                                                                         <  5:645950/84‑1 (MQ=255)
                                                                                                                                                tCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTGAATCTCTTTACTGAAtt                                                                                                                                                               <  5:328577/105‑1 (MQ=255)
                                                                                                                                                tCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAAAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAtt                                                                                                                                                               >  6:328577/1‑105 (MQ=255)
                                                                                                                                                 cGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgggg                                                                                                                   >  5:428833/1‑148 (MQ=255)
                                                                                                                                                      ttAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAct                                                                                                                                                                                                 <  8:949909/65‑1 (MQ=255)
                                                                                                                                                      ttAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAct                                                                                                                                                                                                 >  7:949909/1‑65 (MQ=255)
                                                                                                                                                                      tacaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTat                                                                                              <  6:428833/148‑1 (MQ=255)
                                                                                                                                                                       acaatTAATTAAGAATAAACAAGTTTAATAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTaa                                                                                                                                                         <  7:662087/88‑1 (MQ=255)
                                                                                                                                                                       acaatTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTACAACTCACTTCTTATCTATACAACTCAATCTCTTTACTGAATTAGTTaa                                                                                                                                                         >  8:662087/1‑88 (MQ=255)
                                                                                                                                                                          attaattaAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTaa                                                                                                                                                                              >  6:1055290/1‑64 (MQ=255)
                                                                                                                                                                          attaattaAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTaa                                                                                                                                                                              <  5:1055290/64‑1 (MQ=255)
                                                                                                                                                                           ttaattaaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCttt                                                                                                                                                                       >  5:340489/1‑70 (MQ=255)
                                                                                                                                                                           ttaattaaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCttt                                                                                                                                                                       <  6:340489/70‑1 (MQ=255)
                                                                                                                                                                                taaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt                                                                                                        <  6:505370/128‑1 (MQ=255)
                                                                                                                                                                                taaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGt                                                                                                        >  5:505370/1‑128 (MQ=255)
                                                                                                                                                                                  aGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGtt                                                                                                                       >  7:794232/1‑111 (MQ=255)
                                                                                                                                                                                  aGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGtt                                                                                                                       <  8:794232/111‑1 (MQ=255)
                                                                                                                                                                                     aTAAACAATTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATCGATTTATGATGATTCGGGGAcc                                                                               >  5:966738/1‑148 (MQ=255)
                                                                                                                                                                                     aTAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTATTTAAAGTTTc                                                                                                                                                   <  7:652696/80‑1 (MQ=255)
                                                                                                                                                                                     aTAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                                                                                                                                   >  8:652696/1‑80 (MQ=255)
                                                                                                                                                                                                     agTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAt                                                                                                                                                                >  5:776972/1‑51 (MQ=25)
                                                                                                                                                                                                     agTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAt                                                                                                                                                                <  6:776972/51‑1 (MQ=25)
                                                                                                                                                                                                     agTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtat                                                                                                                            <  8:608648/87‑1 (MQ=255)
                                                                                                                                                                                                     agTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGtat                                                                                                                            >  7:608648/1‑87 (MQ=255)
                                                                                                                                                                                                     agTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTg                                                                                                                      <  6:448317/93‑1 (MQ=255)
                                                                                                                                                                                                     agTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTg                                                                                                                      >  5:448317/1‑93 (MQ=255)
                                                                                                                                                                                                     agTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTAt                                                                                                                                              <  7:724985/69‑1 (MQ=255)
                                                                                                                                                                                                     agTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTAt                                                                                                                                              >  8:724985/1‑69 (MQ=255)
                                                                                                                                                                                                     agTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAggg                                                               <  6:966738/148‑1 (MQ=255)
                                                                                                                                                                                                      gTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTa                                                                                               <  8:491734/115‑1 (MQ=255)
                                                                                                                                                                                                      gTGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTa                                                                                               >  7:491734/1‑115 (MQ=255)
                                                                                                                                                                                                       tGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAg                                                                                                                                                             <  5:1091581/52‑1 (MQ=37)
                                                                                                                                                                                                       tGAGTTTTAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAg                                                                                                                                                             >  6:1091581/1‑52 (MQ=37)
                                                                                                                                                                                                       tGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGat                                                             >  6:790135/1‑148 (MQ=255)
                                                                                                                                                                                                        gAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGata                                                            >  5:745675/1‑148 (MQ=255)
                                                                                                                                                                                                        gAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGc         >  2:77986/1‑199 (MQ=255)
                                                                                                                                                                                                          gTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATAtt                                                          <  5:790135/148‑1 (MQ=255)
                                                                                                                                                                                                           ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGa                                                                                                                                           >  6:251775/1‑66 (MQ=255)
                                                                                                                                                                                                           ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGa                                                                                                                                           <  5:251775/66‑1 (MQ=255)
                                                                                                                                                                                                           ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAtt                                                                                                           <  7:105109/98‑1 (MQ=255)
                                                                                                                                                                                                           ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAtt                                                                                                           >  8:105109/1‑98 (MQ=255)
                                                                                                                                                                                                           ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTa                                                                                               <  5:758811/110‑1 (MQ=255)
                                                                                                                                                                                                           ttAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTa                                                                                               >  6:758811/1‑110 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTCTCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCCGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGta                                                                                                       <  5:556344/101‑1 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtt                                                                                                                                     <  8:108751/71‑1 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCtt                                                                                                                                     >  7:108751/1‑71 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGtcg                                                                                                                      <  8:84245/86‑3 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTg                                                                                                                      >  7:84245/1‑86 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGta                                                                                                       >  6:556344/1‑101 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAg                                                                                                    >  7:733782/1‑104 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAg                                                                                                    <  8:733782/104‑1 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTa                                                                         <  5:88020/131‑1 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTa                                                                         >  6:88020/1‑131 (MQ=255)
                                                                                                                                                                                                            tAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCa     <  4:77985/199‑1 (MQ=255)
                                                                                                                                                                                                             aaaaCTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgg                                                                                                                     >  5:817857/1‑86 (MQ=255)
                                                                                                                                                                                                             aaaaCTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgg                                                                                                                     <  6:817857/86‑1 (MQ=255)
                                                                                                                                                                                                             |                                                                                                                                                                                                        
TTTCACTATTTTATATAGCATATAAAAAACGAGCTTTGGGTTTGTTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATGCGAGGGATATTCCGGAGTACGTGAATTAGGGTAAAATGCAAGCGTTGGTTTATGATAAGCCGCAGCG  >  NC_000913/3798029‑3798434

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: